miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 18837 0.67 0.584453
Target:  5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3'
miRNA:   3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 57502 0.67 0.57451
Target:  5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3'
miRNA:   3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 86726 0.67 0.57451
Target:  5'- -cGCG-GCgCGCCgCCGCGaGGCCGgCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 105552 0.67 0.57451
Target:  5'- cUGCG-GCacgaCGCCCUGCGcgcgcuggcGGCCGCCu -3'
miRNA:   3'- aACGUaCGa---GCGGGGUGCa--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 63762 0.67 0.571534
Target:  5'- -gGCGUcCUCGgcgcCCCCGCGUcgccaggcggggucGGCCGUCg -3'
miRNA:   3'- aaCGUAcGAGC----GGGGUGCA--------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99964 0.67 0.564606
Target:  5'- -cGCAccaaGCUCGCCgCGCucGUGGCgGCg -3'
miRNA:   3'- aaCGUa---CGAGCGGgGUG--CACCGgCGg -5'
29515 3' -61.4 NC_006151.1 + 87604 0.67 0.564606
Target:  5'- -cGCcaGCUCGgCCgC-CGUGGCCuGCCa -3'
miRNA:   3'- aaCGuaCGAGCgGG-GuGCACCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 84937 0.67 0.564606
Target:  5'- -gGCGUGCUCuUCggCACGUGGUaCGCCa -3'
miRNA:   3'- aaCGUACGAGcGGg-GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 120101 0.67 0.564606
Target:  5'- -aGCcgGUGCUgCGCCgCCGCGUGGUggacaUGCUc -3'
miRNA:   3'- aaCG--UACGA-GCGG-GGUGCACCG-----GCGG- -5'
29515 3' -61.4 NC_006151.1 + 60414 0.67 0.564606
Target:  5'- -cGCAcgGCccagCGgCCCACGUccucggggGGCCGCUg -3'
miRNA:   3'- aaCGUa-CGa---GCgGGGUGCA--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 81991 0.67 0.573518
Target:  5'- cUGCAccacgGCg-GCCagggcggCCGCGUGcGCCGCCg -3'
miRNA:   3'- aACGUa----CGagCGG-------GGUGCAC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 50316 0.68 0.493092
Target:  5'- cUGCAggccaacgagacgGC-CGCCCgGCGccUGGCCGCg -3'
miRNA:   3'- aACGUa------------CGaGCGGGgUGC--ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 52368 0.68 0.494032
Target:  5'- -cGCcgGCgCGCCCCcggggcccgcggggGCGgcggGcGCCGCCg -3'
miRNA:   3'- aaCGuaCGaGCGGGG--------------UGCa---C-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69285 0.68 0.496858
Target:  5'- -gGCG-GCgCGCCaCCAgGgacacgGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUgCa-----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 103183 0.68 0.496858
Target:  5'- -cGcCAUGgaCGCcgCCCugGcGGCCGCCc -3'
miRNA:   3'- aaC-GUACgaGCG--GGGugCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107595 0.68 0.496858
Target:  5'- -cGCcaaGCUgGCCCCGcCG-GcGCCGCCg -3'
miRNA:   3'- aaCGua-CGAgCGGGGU-GCaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 37137 0.68 0.496858
Target:  5'- -cGCcccaCUCGCCCgCGcCG-GGCCGCCa -3'
miRNA:   3'- aaCGuac-GAGCGGG-GU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 3620 0.68 0.496858
Target:  5'- -gGCcgugGC-CGuCCCCGCGgagGGCCGCg -3'
miRNA:   3'- aaCGua--CGaGC-GGGGUGCa--CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 7174 0.68 0.496858
Target:  5'- -cGCAUGCUCGgcacgcgacccaCCCC-CGUGGUgcuagcgaGCCa -3'
miRNA:   3'- aaCGUACGAGC------------GGGGuGCACCGg-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.