Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 58300 | 0.66 | 0.634531 |
Target: 5'- -cGCucauCUCGCCCCgGCGUuucagcggcGGCgCGCCg -3' miRNA: 3'- aaCGuac-GAGCGGGG-UGCA---------CCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 87604 | 0.67 | 0.564606 |
Target: 5'- -cGCcaGCUCGgCCgC-CGUGGCCuGCCa -3' miRNA: 3'- aaCGuaCGAGCgGG-GuGCACCGG-CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 84937 | 0.67 | 0.564606 |
Target: 5'- -gGCGUGCUCuUCggCACGUGGUaCGCCa -3' miRNA: 3'- aaCGUACGAGcGGg-GUGCACCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 120101 | 0.67 | 0.564606 |
Target: 5'- -aGCcgGUGCUgCGCCgCCGCGUGGUggacaUGCUc -3' miRNA: 3'- aaCG--UACGA-GCGG-GGUGCACCG-----GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 60414 | 0.67 | 0.564606 |
Target: 5'- -cGCAcgGCccagCGgCCCACGUccucggggGGCCGCUg -3' miRNA: 3'- aaCGUa-CGa---GCgGGGUGCA--------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 97846 | 0.67 | 0.563618 |
Target: 5'- gUGCGcGCgcagCGCgucgUCCGCGUucucggcGGCCGCCa -3' miRNA: 3'- aACGUaCGa---GCG----GGGUGCA-------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 135884 | 0.67 | 0.554748 |
Target: 5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3' miRNA: 3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 115207 | 0.67 | 0.554748 |
Target: 5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3' miRNA: 3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 58130 | 0.67 | 0.554748 |
Target: 5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3' miRNA: 3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 133020 | 0.67 | 0.554748 |
Target: 5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3' miRNA: 3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 103472 | 0.67 | 0.584453 |
Target: 5'- -gGCAcggUGCUCGCggcgcuguggCgCCugGUGGCgCGCUa -3' miRNA: 3'- aaCGU---ACGAGCG----------G-GGugCACCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 99964 | 0.67 | 0.564606 |
Target: 5'- -cGCAccaaGCUCGCCgCGCucGUGGCgGCg -3' miRNA: 3'- aaCGUa---CGAGCGGgGUG--CACCGgCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 63762 | 0.67 | 0.571534 |
Target: 5'- -gGCGUcCUCGgcgcCCCCGCGUcgccaggcggggucGGCCGUCg -3' miRNA: 3'- aaCGUAcGAGC----GGGGUGCA--------------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 81991 | 0.67 | 0.573518 |
Target: 5'- cUGCAccacgGCg-GCCagggcggCCGCGUGcGCCGCCg -3' miRNA: 3'- aACGUa----CGagCGG-------GGUGCAC-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 105552 | 0.67 | 0.57451 |
Target: 5'- cUGCG-GCacgaCGCCCUGCGcgcgcuggcGGCCGCCu -3' miRNA: 3'- aACGUaCGa---GCGGGGUGCa--------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 86726 | 0.67 | 0.57451 |
Target: 5'- -cGCG-GCgCGCCgCCGCGaGGCCGgCg -3' miRNA: 3'- aaCGUaCGaGCGG-GGUGCaCCGGCgG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 97650 | 0.67 | 0.57451 |
Target: 5'- gUGCGcGC-CGCCuCCugGUcGCCGCg -3' miRNA: 3'- aACGUaCGaGCGG-GGugCAcCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 57502 | 0.67 | 0.57451 |
Target: 5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3' miRNA: 3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 18837 | 0.67 | 0.584453 |
Target: 5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3' miRNA: 3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 25111 | 0.67 | 0.584453 |
Target: 5'- cUGCGUGCgagCGCUggGCGUGGaCGCg -3' miRNA: 3'- aACGUACGa--GCGGggUGCACCgGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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