miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 53088 0.68 0.525502
Target:  5'- -cGCAggUGCUCGUCCgucaGCGggaGGCCGUa -3'
miRNA:   3'- aaCGU--ACGAGCGGGg---UGCa--CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 54129 0.67 0.544941
Target:  5'- cUGCGgacggGCUCuGCCCCGgCG-GcGCCGCg -3'
miRNA:   3'- aACGUa----CGAG-CGGGGU-GCaC-CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 56137 0.72 0.306936
Target:  5'- -cGCggGUUCGCCuUCGCGguggucacGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 57110 0.66 0.634531
Target:  5'- -aGCA-GCgcgCGCCgCCGCGcccggcGGUCGCCc -3'
miRNA:   3'- aaCGUaCGa--GCGG-GGUGCa-----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 57502 0.67 0.57451
Target:  5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3'
miRNA:   3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58130 0.67 0.554748
Target:  5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3'
miRNA:   3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 58236 0.66 0.632522
Target:  5'- -aGCAcGCgCGCCgCCACGcgccggcccgcgGGCCGCa -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCa-----------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 58300 0.66 0.634531
Target:  5'- -cGCucauCUCGCCCCgGCGUuucagcggcGGCgCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGGGG-UGCA---------CCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 58739 0.68 0.525502
Target:  5'- -cGCGUcGCgcaGCgCCGCGgccaccgcGGCCGCCg -3'
miRNA:   3'- aaCGUA-CGag-CGgGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58856 0.69 0.459811
Target:  5'- -cGCGUggaGCUCGCCCgGCGcgccgGGuCCGUCc -3'
miRNA:   3'- aaCGUA---CGAGCGGGgUGCa----CC-GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58911 0.66 0.594429
Target:  5'- -cGCAcacgcGCUC-CCCCGcCGcGGCCGUCa -3'
miRNA:   3'- aaCGUa----CGAGcGGGGU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 59422 0.71 0.350709
Target:  5'- -aGCAgcgGCgccaGCUCgGCGUcGGCCGCCg -3'
miRNA:   3'- aaCGUa--CGag--CGGGgUGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 60414 0.67 0.564606
Target:  5'- -cGCAcgGCccagCGgCCCACGUccucggggGGCCGCUg -3'
miRNA:   3'- aaCGUa-CGa---GCgGGGUGCA--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 60662 0.72 0.280149
Target:  5'- -cGCGUcCUCGCUCC-CGUcGCCGCCg -3'
miRNA:   3'- aaCGUAcGAGCGGGGuGCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 61449 0.66 0.614454
Target:  5'- -cGCccGCgucCGCCgCCAUGUgcgGGCCGCg -3'
miRNA:   3'- aaCGuaCGa--GCGG-GGUGCA---CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 61522 0.71 0.366254
Target:  5'- cUGCggGUUCGCCC----UGGCCGCCc -3'
miRNA:   3'- aACGuaCGAGCGGGgugcACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 61817 0.67 0.544941
Target:  5'- -aGCGUGg-UGCUCUACGcggcgucgacggUGGCCGCCc -3'
miRNA:   3'- aaCGUACgaGCGGGGUGC------------ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 62286 0.7 0.39624
Target:  5'- cUGCGUGCUCGUggccagcgcggccuUCgGCGUGuCCGCCc -3'
miRNA:   3'- aACGUACGAGCG--------------GGgUGCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 63762 0.67 0.571534
Target:  5'- -gGCGUcCUCGgcgcCCCCGCGUcgccaggcggggucGGCCGUCg -3'
miRNA:   3'- aaCGUAcGAGC----GGGGUGCA--------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64192 0.71 0.366254
Target:  5'- -cGCccGCgaUCGCCCCgggcagguccgGCGUGGgCGCCu -3'
miRNA:   3'- aaCGuaCG--AGCGGGG-----------UGCACCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.