miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 27103 0.72 0.286667
Target:  5'- -cGCGUG-UCGCCCguCACGUcGGCgGCCg -3'
miRNA:   3'- aaCGUACgAGCGGG--GUGCA-CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 36334 0.68 0.487466
Target:  5'- -gGCcgGCUCcggGCCCC----GGCCGCCg -3'
miRNA:   3'- aaCGuaCGAG---CGGGGugcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 36993 0.66 0.604432
Target:  5'- -gGCccGCUCGCCCUcCGccccccgGGCCcccGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGGGuGCa------CCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 37137 0.68 0.496858
Target:  5'- -cGCcccaCUCGCCCgCGcCG-GGCCGCCa -3'
miRNA:   3'- aaCGuac-GAGCGGG-GU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 37942 0.66 0.64457
Target:  5'- -cGCAgcccgGCcgcgUGCCCCGCGagcUGGCggaCGCCu -3'
miRNA:   3'- aaCGUa----CGa---GCGGGGUGC---ACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 38034 0.68 0.487466
Target:  5'- cUGCccGCgccCGCCCgCGCcccGGCCGCCc -3'
miRNA:   3'- aACGuaCGa--GCGGG-GUGca-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 38208 0.71 0.320331
Target:  5'- -aGCGUggacgggGCcCGCgCCCGCGaGGCCGCCu -3'
miRNA:   3'- aaCGUA-------CGaGCG-GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 38252 0.73 0.267467
Target:  5'- -cGCG-GCccucuUCGCCCCggccaACGUGGCCGCg -3'
miRNA:   3'- aaCGUaCG-----AGCGGGG-----UGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 39003 0.69 0.468939
Target:  5'- -cGCGccGCggCGCCCCGCuccGCCGCCg -3'
miRNA:   3'- aaCGUa-CGa-GCGGGGUGcacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39535 0.66 0.59343
Target:  5'- -gGCcUGCuUCG-CCCGCGUGGaggccuccuucgcCCGCCu -3'
miRNA:   3'- aaCGuACG-AGCgGGGUGCACC-------------GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39689 0.66 0.614454
Target:  5'- -cGCGUGCU--CCCCAcCGUGGaCgGCUg -3'
miRNA:   3'- aaCGUACGAgcGGGGU-GCACC-GgCGG- -5'
29515 3' -61.4 NC_006151.1 + 39916 0.68 0.496858
Target:  5'- -cGCGggcUGCUggaGCCCgACGccgaGGCCGCCc -3'
miRNA:   3'- aaCGU---ACGAg--CGGGgUGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 44013 0.71 0.335639
Target:  5'- -cGCA-GCcccCGCCCCGCGgggagccGGCCGUCg -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 45183 0.7 0.407144
Target:  5'- -gGCGUGCcCGCCaCCACGgacGGCgacggggugCGCCg -3'
miRNA:   3'- aaCGUACGaGCGG-GGUGCa--CCG---------GCGG- -5'
29515 3' -61.4 NC_006151.1 + 50316 0.68 0.493092
Target:  5'- cUGCAggccaacgagacgGC-CGCCCgGCGccUGGCCGCg -3'
miRNA:   3'- aACGUa------------CGaGCGGGgUGC--ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 50602 0.68 0.487466
Target:  5'- -aGCA-GCggGCCCCGCGccGCCGCg -3'
miRNA:   3'- aaCGUaCGagCGGGGUGCacCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 50628 0.7 0.407144
Target:  5'- -aGCGUGCaCGCCUCgGCGacGGCCGCg -3'
miRNA:   3'- aaCGUACGaGCGGGG-UGCa-CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 51180 0.69 0.424282
Target:  5'- gUGCAggGCcCGCUCCACGacgagGGUgGCCa -3'
miRNA:   3'- aACGUa-CGaGCGGGGUGCa----CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 51274 0.68 0.478158
Target:  5'- -gGCAUcacgaGCgCGCCCU-CGggGGCCGCCg -3'
miRNA:   3'- aaCGUA-----CGaGCGGGGuGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 52368 0.68 0.494032
Target:  5'- -cGCcgGCgCGCCCCcggggcccgcggggGCGgcggGcGCCGCCg -3'
miRNA:   3'- aaCGuaCGaGCGGGG--------------UGCa---C-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.