miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 128194 0.71 0.344624
Target:  5'- -aGCGUGCcgcgcuccauggCGCCCCAggcgugcgacgagcuCGUGGgCGCCa -3'
miRNA:   3'- aaCGUACGa-----------GCGGGGU---------------GCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 127517 0.71 0.325375
Target:  5'- -cGCAUGCUCccguggcgcgucaGCggggCCCAgggggcgucgucguCGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAG-------------CG----GGGU--------------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 125376 0.66 0.634531
Target:  5'- -cGaCAUGCUgGgCCgCAuCGcGGCCGCCu -3'
miRNA:   3'- aaC-GUACGAgCgGG-GU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 125200 0.72 0.286667
Target:  5'- -gGCGUcGUggGCCCCGCGgcccccgcGGCCGCCc -3'
miRNA:   3'- aaCGUA-CGagCGGGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 123240 0.7 0.415659
Target:  5'- -cGCAcgGCgcgCGUUCUGCGaGGCCGCCg -3'
miRNA:   3'- aaCGUa-CGa--GCGGGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 122730 0.66 0.634531
Target:  5'- -aGCAcuuUGaC-CGCgCCCGCGcGGCCGCg -3'
miRNA:   3'- aaCGU---AC-GaGCG-GGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 122407 0.7 0.415659
Target:  5'- -gGCGgcGCUCGCCgC-CGUGgacGCCGCCg -3'
miRNA:   3'- aaCGUa-CGAGCGGgGuGCAC---CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 120446 0.68 0.496858
Target:  5'- -cGC-UGUUC-CCCCGCGgcaaGCCGCCc -3'
miRNA:   3'- aaCGuACGAGcGGGGUGCac--CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 120336 0.68 0.478158
Target:  5'- -cGCc-GCgCGCgCCCGCGUGGCCGg- -3'
miRNA:   3'- aaCGuaCGaGCG-GGGUGCACCGGCgg -5'
29515 3' -61.4 NC_006151.1 + 120101 0.67 0.564606
Target:  5'- -aGCcgGUGCUgCGCCgCCGCGUGGUggacaUGCUc -3'
miRNA:   3'- aaCG--UACGA-GCGG-GGUGCACCG-----GCGG- -5'
29515 3' -61.4 NC_006151.1 + 119461 0.66 0.594429
Target:  5'- -cGaCGUGgaCGCCgugcgCUACGUGGCCGgCa -3'
miRNA:   3'- aaC-GUACgaGCGG-----GGUGCACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 119059 0.68 0.525502
Target:  5'- -cGCG-GC-CGCCuCCGCG-GGCgCGCCc -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 118193 0.73 0.273749
Target:  5'- -gGCcgGCuUCGCCgggCACGUGGCCGUg -3'
miRNA:   3'- aaCGuaCG-AGCGGg--GUGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 117617 0.68 0.496858
Target:  5'- -cGUggGCUCGCgcgcgagcgugCCCACGUGcacGCCGCg -3'
miRNA:   3'- aaCGuaCGAGCG-----------GGGUGCAC---CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 117247 0.66 0.59343
Target:  5'- -cGUcgGCggGCCCgaggcgcgggccgCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGagCGGG-------------GUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117163 0.67 0.544941
Target:  5'- -cGCuguUGCUCGagaCGCGguagaagGGCCGCCg -3'
miRNA:   3'- aaCGu--ACGAGCgggGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117084 0.66 0.631518
Target:  5'- -cGCGUGgUCGCgUCCACGccGGCCucgugcgucaccagGCCg -3'
miRNA:   3'- aaCGUACgAGCG-GGGUGCa-CCGG--------------CGG- -5'
29515 3' -61.4 NC_006151.1 + 117003 0.69 0.450779
Target:  5'- -cGCAgcaccacgcGCUC-CCCCGCGggcccgGGCCGCa -3'
miRNA:   3'- aaCGUa--------CGAGcGGGGUGCa-----CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 116516 0.68 0.500638
Target:  5'- -aGC-UGUUCuGgCCCGCGUcguagacgcggaacuGGCCGCCg -3'
miRNA:   3'- aaCGuACGAG-CgGGGUGCA---------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 115649 0.68 0.478158
Target:  5'- -aGCAUGUcgCGgCCgauggucguCACgGUGGCCGCCa -3'
miRNA:   3'- aaCGUACGa-GCgGG---------GUG-CACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.