miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 141752 0.7 0.390446
Target:  5'- -cGCGggGCgcgCGCCCCG-GUGGCguCGCCg -3'
miRNA:   3'- aaCGUa-CGa--GCGGGGUgCACCG--GCGG- -5'
29515 3' -61.4 NC_006151.1 + 141597 0.69 0.459811
Target:  5'- -gGCGagaGC-CGCCCgGCGaGGCUGCCg -3'
miRNA:   3'- aaCGUa--CGaGCGGGgUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 140185 0.71 0.321048
Target:  5'- -cGCAcGCUgGaCCCCAuCGUGGCCaCCg -3'
miRNA:   3'- aaCGUaCGAgC-GGGGU-GCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 139923 0.73 0.255253
Target:  5'- -cGCggGCUCGUCgC-CGUgGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGgGuGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 138916 0.8 0.089399
Target:  5'- -aGCGUGCUCGCCgCCACGgucaucGGCUGCa -3'
miRNA:   3'- aaCGUACGAGCGG-GGUGCa-----CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 137710 0.69 0.466191
Target:  5'- -cGCGUGUgcaCGCCCUGCcgucgccguacgcgGUGGCCGgCg -3'
miRNA:   3'- aaCGUACGa--GCGGGGUG--------------CACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 136851 0.71 0.335639
Target:  5'- -cGCcgGCcucgCGCgCCGCGUGaCCGCCg -3'
miRNA:   3'- aaCGuaCGa---GCGgGGUGCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 136755 0.66 0.614454
Target:  5'- -cGCGcGcCUCGCCCCGgcCaUGGgCGCCg -3'
miRNA:   3'- aaCGUaC-GAGCGGGGU--GcACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 136653 0.75 0.191354
Target:  5'- -gGC--GCUCGCCCCucggggagcGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGGG---------UGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135356 0.7 0.382267
Target:  5'- -cGCGaGC-CGCCgCGCGuUGGCCGCg -3'
miRNA:   3'- aaCGUaCGaGCGGgGUGC-ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 134709 0.76 0.177737
Target:  5'- aUGCA-GCacCGCCCCGCGUGGCCuUCg -3'
miRNA:   3'- aACGUaCGa-GCGGGGUGCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 134311 0.68 0.506331
Target:  5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3'
miRNA:   3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5'
29515 3' -61.4 NC_006151.1 + 134268 0.66 0.62449
Target:  5'- gUGCAgGCgauuguaGCCCCg---GGCCGCCc -3'
miRNA:   3'- aACGUaCGag-----CGGGGugcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 133223 0.67 0.544941
Target:  5'- -gGCGUGCgUCGCgCCGCGccagGGCaCGUUg -3'
miRNA:   3'- aaCGUACG-AGCGgGGUGCa---CCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 133020 0.67 0.554748
Target:  5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3'
miRNA:   3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 129519 0.66 0.634531
Target:  5'- -aGCc-GCUUGCCgCCgACGggggggcccggGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GG-UGCa----------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128766 0.68 0.487466
Target:  5'- aUGUAguagGCguacCGCUCCACGgccucGGUCGCCu -3'
miRNA:   3'- aACGUa---CGa---GCGGGGUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128617 0.72 0.30006
Target:  5'- -cGCG-GCgugCGCCCCAgGUGGCgGaCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUgCACCGgC-GG- -5'
29515 3' -61.4 NC_006151.1 + 128446 0.75 0.191354
Target:  5'- -gGCGU-CUCGgCCCACGUGG-CGCCg -3'
miRNA:   3'- aaCGUAcGAGCgGGGUGCACCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.