Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 141752 | 0.7 | 0.390446 |
Target: 5'- -cGCGggGCgcgCGCCCCG-GUGGCguCGCCg -3' miRNA: 3'- aaCGUa-CGa--GCGGGGUgCACCG--GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 141597 | 0.69 | 0.459811 |
Target: 5'- -gGCGagaGC-CGCCCgGCGaGGCUGCCg -3' miRNA: 3'- aaCGUa--CGaGCGGGgUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 140185 | 0.71 | 0.321048 |
Target: 5'- -cGCAcGCUgGaCCCCAuCGUGGCCaCCg -3' miRNA: 3'- aaCGUaCGAgC-GGGGU-GCACCGGcGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 139923 | 0.73 | 0.255253 |
Target: 5'- -cGCggGCUCGUCgC-CGUgGGCCGCCg -3' miRNA: 3'- aaCGuaCGAGCGGgGuGCA-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 138916 | 0.8 | 0.089399 |
Target: 5'- -aGCGUGCUCGCCgCCACGgucaucGGCUGCa -3' miRNA: 3'- aaCGUACGAGCGG-GGUGCa-----CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 137710 | 0.69 | 0.466191 |
Target: 5'- -cGCGUGUgcaCGCCCUGCcgucgccguacgcgGUGGCCGgCg -3' miRNA: 3'- aaCGUACGa--GCGGGGUG--------------CACCGGCgG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 136851 | 0.71 | 0.335639 |
Target: 5'- -cGCcgGCcucgCGCgCCGCGUGaCCGCCg -3' miRNA: 3'- aaCGuaCGa---GCGgGGUGCACcGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 136755 | 0.66 | 0.614454 |
Target: 5'- -cGCGcGcCUCGCCCCGgcCaUGGgCGCCg -3' miRNA: 3'- aaCGUaC-GAGCGGGGU--GcACCgGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 136653 | 0.75 | 0.191354 |
Target: 5'- -gGC--GCUCGCCCCucggggagcGCGcGGCCGCCg -3' miRNA: 3'- aaCGuaCGAGCGGGG---------UGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 135884 | 0.67 | 0.554748 |
Target: 5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3' miRNA: 3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 135356 | 0.7 | 0.382267 |
Target: 5'- -cGCGaGC-CGCCgCGCGuUGGCCGCg -3' miRNA: 3'- aaCGUaCGaGCGGgGUGC-ACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 134709 | 0.76 | 0.177737 |
Target: 5'- aUGCA-GCacCGCCCCGCGUGGCCuUCg -3' miRNA: 3'- aACGUaCGa-GCGGGGUGCACCGGcGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 134311 | 0.68 | 0.506331 |
Target: 5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3' miRNA: 3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 134268 | 0.66 | 0.62449 |
Target: 5'- gUGCAgGCgauuguaGCCCCg---GGCCGCCc -3' miRNA: 3'- aACGUaCGag-----CGGGGugcaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 133223 | 0.67 | 0.544941 |
Target: 5'- -gGCGUGCgUCGCgCCGCGccagGGCaCGUUg -3' miRNA: 3'- aaCGUACG-AGCGgGGUGCa---CCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 133020 | 0.67 | 0.554748 |
Target: 5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3' miRNA: 3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 129519 | 0.66 | 0.634531 |
Target: 5'- -aGCc-GCUUGCCgCCgACGggggggcccggGGCCGCCg -3' miRNA: 3'- aaCGuaCGAGCGG-GG-UGCa----------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 128766 | 0.68 | 0.487466 |
Target: 5'- aUGUAguagGCguacCGCUCCACGgccucGGUCGCCu -3' miRNA: 3'- aACGUa---CGa---GCGGGGUGCa----CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 128617 | 0.72 | 0.30006 |
Target: 5'- -cGCG-GCgugCGCCCCAgGUGGCgGaCCa -3' miRNA: 3'- aaCGUaCGa--GCGGGGUgCACCGgC-GG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 128446 | 0.75 | 0.191354 |
Target: 5'- -gGCGU-CUCGgCCCACGUGG-CGCCg -3' miRNA: 3'- aaCGUAcGAGCgGGGUGCACCgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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