miRNA display CGI


Results 1 - 20 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 769 0.69 0.441845
Target:  5'- -gGCucccCUCGCgCCACGcGGUCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGgGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 3620 0.68 0.496858
Target:  5'- -gGCcgugGC-CGuCCCCGCGgagGGCCGCg -3'
miRNA:   3'- aaCGua--CGaGC-GGGGUGCa--CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 6772 0.73 0.249319
Target:  5'- uUUGCAUGCcCGgCCCAagaugGcGGCCGCCg -3'
miRNA:   3'- -AACGUACGaGCgGGGUg----CaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6843 0.73 0.261302
Target:  5'- uUUGCAUGCcCgGCCCC-CGcGGCgGCCa -3'
miRNA:   3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 6927 0.66 0.614454
Target:  5'- uUUGCAUGUcCGgCCC-CGaGGgCGCCa -3'
miRNA:   3'- -AACGUACGaGCgGGGuGCaCCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 7008 0.7 0.374202
Target:  5'- uUUGCAUGUcCgGCCCC-CGcGGCgGCCa -3'
miRNA:   3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 7090 0.69 0.440957
Target:  5'- uUUGCAUGCccggccCGCUCUGCGgccaucuUGGCCGCg -3'
miRNA:   3'- -AACGUACGa-----GCGGGGUGC-------ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 7174 0.68 0.496858
Target:  5'- -cGCAUGCUCGgcacgcgacccaCCCC-CGUGGUgcuagcgaGCCa -3'
miRNA:   3'- aaCGUACGAGC------------GGGGuGCACCGg-------CGG- -5'
29515 3' -61.4 NC_006151.1 + 7256 1.08 0.000904
Target:  5'- uUUGCAUGCUCGCCCCACGUGGCCGCCc -3'
miRNA:   3'- -AACGUACGAGCGGGGUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 8966 0.74 0.237795
Target:  5'- -cGCGcGCgCGCCCCgggaagggucggGCGaUGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGGGG------------UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 9041 0.71 0.3261
Target:  5'- -cGCcgGggCGCCCCGCGUgcuccgggggcgccGGCCgGCCa -3'
miRNA:   3'- aaCGuaCgaGCGGGGUGCA--------------CCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 9470 0.68 0.525502
Target:  5'- -cGCGUccGCUUcgGCCCCcCGcGGCCGCg -3'
miRNA:   3'- aaCGUA--CGAG--CGGGGuGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 11020 0.66 0.64457
Target:  5'- -cGCccGCUCGCUCgC-CG-GGCCgGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGG-GuGCaCCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 11666 0.68 0.525502
Target:  5'- -cGCGuuUGCUacgaucccugCGCCCgACGgGGCCGCg -3'
miRNA:   3'- aaCGU--ACGA----------GCGGGgUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 18522 0.68 0.505381
Target:  5'- -aGCAUGCgCGUCCCcgcccGCGUcggcacccggaacGGCCGCg -3'
miRNA:   3'- aaCGUACGaGCGGGG-----UGCA-------------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 18837 0.67 0.584453
Target:  5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3'
miRNA:   3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 19367 0.66 0.64457
Target:  5'- -aGCGUGUagaGgCCCgugucguuggGCGUGGCcCGCCg -3'
miRNA:   3'- aaCGUACGag-CgGGG----------UGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 23906 0.7 0.382267
Target:  5'- -gGCGUcggucGCggGCCCgACG-GGCCGCCg -3'
miRNA:   3'- aaCGUA-----CGagCGGGgUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 25111 0.67 0.584453
Target:  5'- cUGCGUGCgagCGCUggGCGUGGaCGCg -3'
miRNA:   3'- aACGUACGa--GCGGggUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 26334 0.66 0.594429
Target:  5'- -gGCGagGCcCGCCUCACGgggcggcggcgGGCCGCg -3'
miRNA:   3'- aaCGUa-CGaGCGGGGUGCa----------CCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.