miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 7256 1.08 0.000904
Target:  5'- uUUGCAUGCUCGCCCCACGUGGCCGCCc -3'
miRNA:   3'- -AACGUACGAGCGGGGUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 114115 0.82 0.060292
Target:  5'- -gGCGgcUGCU-GCCCCACGUGcGCCGCCg -3'
miRNA:   3'- aaCGU--ACGAgCGGGGUGCAC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 73951 0.81 0.074445
Target:  5'- gUGCGUGCgcaUGUCCCGCGUGGCCaCCg -3'
miRNA:   3'- aACGUACGa--GCGGGGUGCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 85345 0.8 0.089399
Target:  5'- -aGCGUGCUCGCCgCGC-UGGCgCGCCu -3'
miRNA:   3'- aaCGUACGAGCGGgGUGcACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 138916 0.8 0.089399
Target:  5'- -aGCGUGCUCGCCgCCACGgucaucGGCUGCa -3'
miRNA:   3'- aaCGUACGAGCGG-GGUGCa-----CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 134709 0.76 0.177737
Target:  5'- aUGCA-GCacCGCCCCGCGUGGCCuUCg -3'
miRNA:   3'- aACGUaCGa-GCGGGGUGCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 69680 0.75 0.186716
Target:  5'- -cGCGUcaGCUgCGCCUCGCcgucgaugGUGGCCGCCg -3'
miRNA:   3'- aaCGUA--CGA-GCGGGGUG--------CACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84603 0.75 0.186716
Target:  5'- -cGCAcGCgaacgcgCGCCgCCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGUaCGa------GCGG-GGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 81474 0.75 0.186716
Target:  5'- -aGCAggcugaaggGCUCGUUCCACGcGGCCGUCg -3'
miRNA:   3'- aaCGUa--------CGAGCGGGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128446 0.75 0.191354
Target:  5'- -gGCGU-CUCGgCCCACGUGG-CGCCg -3'
miRNA:   3'- aaCGUAcGAGCgGGGUGCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 136653 0.75 0.191354
Target:  5'- -gGC--GCUCGCCCCucggggagcGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGGG---------UGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 104410 0.74 0.232201
Target:  5'- -gGCGUGCUgG-CCCGCGccGCCGCCg -3'
miRNA:   3'- aaCGUACGAgCgGGGUGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 8966 0.74 0.237795
Target:  5'- -cGCGcGCgCGCCCCgggaagggucggGCGaUGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGGGG------------UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 100546 0.73 0.2435
Target:  5'- cUGCAgacgagcGC-CGCCCuCACGgccGGCCGCCu -3'
miRNA:   3'- aACGUa------CGaGCGGG-GUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 87493 0.73 0.2435
Target:  5'- -cGCG-GC-CGCCCC-CGUucaGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGGGGuGCA---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70924 0.73 0.245814
Target:  5'- -cGCGUGCUggcgcugcacgacggCGCCUucucggcggugCGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUACGA---------------GCGGG-----------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6772 0.73 0.249319
Target:  5'- uUUGCAUGCcCGgCCCAagaugGcGGCCGCCg -3'
miRNA:   3'- -AACGUACGaGCgGGGUg----CaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 139923 0.73 0.255253
Target:  5'- -cGCggGCUCGUCgC-CGUgGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGgGuGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64423 0.73 0.255253
Target:  5'- -cGCucucGCUCuGCgCgCGCGUGGCCGCCu -3'
miRNA:   3'- aaCGua--CGAG-CGgG-GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6843 0.73 0.261302
Target:  5'- uUUGCAUGCcCgGCCCC-CGcGGCgGCCa -3'
miRNA:   3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.