miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 38252 0.73 0.267467
Target:  5'- -cGCG-GCccucuUCGCCCCggccaACGUGGCCGCg -3'
miRNA:   3'- aaCGUaCG-----AGCGGGG-----UGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 109728 0.73 0.273749
Target:  5'- -cGCugcGCUCGCCgCUGgagcggaugcCGUGGCCGCCg -3'
miRNA:   3'- aaCGua-CGAGCGG-GGU----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 118193 0.73 0.273749
Target:  5'- -gGCcgGCuUCGCCgggCACGUGGCCGUg -3'
miRNA:   3'- aaCGuaCG-AGCGGg--GUGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 60662 0.72 0.280149
Target:  5'- -cGCGUcCUCGCUCC-CGUcGCCGCCg -3'
miRNA:   3'- aaCGUAcGAGCGGGGuGCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 111130 0.72 0.280149
Target:  5'- -cGCgucuGUGCgCGCCCCcgcgcGCGcGGCCGCCu -3'
miRNA:   3'- aaCG----UACGaGCGGGG-----UGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 125200 0.72 0.286667
Target:  5'- -gGCGUcGUggGCCCCGCGgcccccgcGGCCGCCc -3'
miRNA:   3'- aaCGUA-CGagCGGGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 27103 0.72 0.286667
Target:  5'- -cGCGUG-UCGCCCguCACGUcGGCgGCCg -3'
miRNA:   3'- aaCGUACgAGCGGG--GUGCA-CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 99116 0.72 0.289307
Target:  5'- -gGCGUGCUgGCgcugcuggaccCCggggcgcaggccgugCACGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAgCG-----------GG---------------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128617 0.72 0.30006
Target:  5'- -cGCG-GCgugCGCCCCAgGUGGCgGaCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUgCACCGgC-GG- -5'
29515 3' -61.4 NC_006151.1 + 106208 0.72 0.30006
Target:  5'- gUGCG-GCUCGCCCUccccgaccugAUgGUGGCCGCg -3'
miRNA:   3'- aACGUaCGAGCGGGG----------UG-CACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 69544 0.72 0.30006
Target:  5'- cUGCAUcaGCcCGCUcgCCACGUGGCUGCg -3'
miRNA:   3'- aACGUA--CGaGCGG--GGUGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 56137 0.72 0.306936
Target:  5'- -cGCggGUUCGCCuUCGCGguggucacGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 114223 0.72 0.306936
Target:  5'- -cGCGUGUUCcugGCCUCG-GUGGCCGCg -3'
miRNA:   3'- aaCGUACGAG---CGGGGUgCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 38208 0.71 0.320331
Target:  5'- -aGCGUggacgggGCcCGCgCCCGCGaGGCCGCCu -3'
miRNA:   3'- aaCGUA-------CGaGCG-GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 140185 0.71 0.321048
Target:  5'- -cGCAcGCUgGaCCCCAuCGUGGCCaCCg -3'
miRNA:   3'- aaCGUaCGAgC-GGGGU-GCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 83424 0.71 0.321048
Target:  5'- gUUGCcgccgggggGCUC-CCCgggcaGCGUGGCCGCCa -3'
miRNA:   3'- -AACGua-------CGAGcGGGg----UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 127517 0.71 0.325375
Target:  5'- -cGCAUGCUCccguggcgcgucaGCggggCCCAgggggcgucgucguCGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAG-------------CG----GGGU--------------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 9041 0.71 0.3261
Target:  5'- -cGCcgGggCGCCCCGCGUgcuccgggggcgccGGCCgGCCa -3'
miRNA:   3'- aaCGuaCgaGCGGGGUGCA--------------CCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 44013 0.71 0.335639
Target:  5'- -cGCA-GCcccCGCCCCGCGgggagccGGCCGUCg -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 79097 0.71 0.335639
Target:  5'- -cGCGaGCgagCGCCCCuccguCGUGGCUggGCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGu----GCACCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.