miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 108434 0.66 0.62449
Target:  5'- -gGCGggaGC-CGCCuCCcCG-GGCCGCCc -3'
miRNA:   3'- aaCGUa--CGaGCGG-GGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 134268 0.66 0.62449
Target:  5'- gUGCAgGCgauuguaGCCCCg---GGCCGCCc -3'
miRNA:   3'- aACGUaCGag-----CGGGGugcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 73114 0.66 0.62449
Target:  5'- -cGCcgGCggcgCGCCCgCGCG-GGuuGCa -3'
miRNA:   3'- aaCGuaCGa---GCGGG-GUGCaCCggCGg -5'
29515 3' -61.4 NC_006151.1 + 85606 0.66 0.62449
Target:  5'- -gGCGcGCUCGUgCCCaacGCGccGCCGCCg -3'
miRNA:   3'- aaCGUaCGAGCG-GGG---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 96392 0.66 0.62449
Target:  5'- -cGCgGUGC-CGgCgCACGgcGGCCGCCa -3'
miRNA:   3'- aaCG-UACGaGCgGgGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 77283 0.66 0.62449
Target:  5'- -cGCucacccauuUGC-CGCgCCGCGUGugcccGCCGCCa -3'
miRNA:   3'- aaCGu--------ACGaGCGgGGUGCAC-----CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 61449 0.66 0.614454
Target:  5'- -cGCccGCgucCGCCgCCAUGUgcgGGCCGCg -3'
miRNA:   3'- aaCGuaCGa--GCGG-GGUGCA---CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 39689 0.66 0.614454
Target:  5'- -cGCGUGCU--CCCCAcCGUGGaCgGCUg -3'
miRNA:   3'- aaCGUACGAgcGGGGU-GCACC-GgCGG- -5'
29515 3' -61.4 NC_006151.1 + 136755 0.66 0.614454
Target:  5'- -cGCGcGcCUCGCCCCGgcCaUGGgCGCCg -3'
miRNA:   3'- aaCGUaC-GAGCGGGGU--GcACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 95377 0.66 0.614454
Target:  5'- gUUGCAgacgccguuCUCGCCggGCGUGGcCCGCUg -3'
miRNA:   3'- -AACGUac-------GAGCGGggUGCACC-GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6927 0.66 0.614454
Target:  5'- uUUGCAUGUcCGgCCC-CGaGGgCGCCa -3'
miRNA:   3'- -AACGUACGaGCgGGGuGCaCCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 36993 0.66 0.604432
Target:  5'- -gGCccGCUCGCCCUcCGccccccgGGCCcccGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGGGuGCa------CCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 84258 0.66 0.604432
Target:  5'- -aGCAUGCgcgUGCUCgACGUGaCgCGCCu -3'
miRNA:   3'- aaCGUACGa--GCGGGgUGCACcG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 71666 0.66 0.604432
Target:  5'- aUGCAcacgCGCgCCACG-GGCCGCg -3'
miRNA:   3'- aACGUacgaGCGgGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 100938 0.66 0.594429
Target:  5'- gUGCcccUGCUCGCgCaaACGUGGgUGCCc -3'
miRNA:   3'- aACGu--ACGAGCG-GggUGCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58911 0.66 0.594429
Target:  5'- -cGCAcacgcGCUC-CCCCGcCGcGGCCGUCa -3'
miRNA:   3'- aaCGUa----CGAGcGGGGU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 110184 0.66 0.594429
Target:  5'- -cGCGUGC-CGCCUgauaGCGc-GCCGCCu -3'
miRNA:   3'- aaCGUACGaGCGGGg---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 119461 0.66 0.594429
Target:  5'- -cGaCGUGgaCGCCgugcgCUACGUGGCCGgCa -3'
miRNA:   3'- aaC-GUACgaGCGG-----GGUGCACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 26334 0.66 0.594429
Target:  5'- -gGCGagGCcCGCCUCACGgggcggcggcgGGCCGCg -3'
miRNA:   3'- aaCGUa-CGaGCGGGGUGCa----------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 117247 0.66 0.59343
Target:  5'- -cGUcgGCggGCCCgaggcgcgggccgCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGagCGGG-------------GUGCaCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.