miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 64319 0.66 0.631518
Target:  5'- -cGcCGUGCUgGCCucgcaCCACGUcggcgggaagcgcgGGCCGUCg -3'
miRNA:   3'- aaC-GUACGAgCGG-----GGUGCA--------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64423 0.73 0.255253
Target:  5'- -cGCucucGCUCuGCgCgCGCGUGGCCGCCu -3'
miRNA:   3'- aaCGua--CGAG-CGgG-GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64509 0.69 0.468939
Target:  5'- -gGCggGCgcgCGCCgCCAaa-GGCCGCCg -3'
miRNA:   3'- aaCGuaCGa--GCGG-GGUgcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 66054 0.67 0.544941
Target:  5'- gUGCcUGUccagGaCCCCGCGgacGGCCGCCu -3'
miRNA:   3'- aACGuACGag--C-GGGGUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 68122 0.68 0.496858
Target:  5'- -cGCAcgaGCUCGCCgCCgcucccgcggaGCGUggucguggucacGGCCGCCa -3'
miRNA:   3'- aaCGUa--CGAGCGG-GG-----------UGCA------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69191 0.71 0.357646
Target:  5'- -cGCGccagggGCUCGCuccggggCCCGCGccGGCCGCCc -3'
miRNA:   3'- aaCGUa-----CGAGCG-------GGGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69285 0.68 0.496858
Target:  5'- -gGCG-GCgCGCCaCCAgGgacacgGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUgCa-----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69544 0.72 0.30006
Target:  5'- cUGCAUcaGCcCGCUcgCCACGUGGCUGCg -3'
miRNA:   3'- aACGUA--CGaGCGG--GGUGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 69646 0.66 0.64457
Target:  5'- -cGCGUGCggCGCCgC-CG-GGUCGUCg -3'
miRNA:   3'- aaCGUACGa-GCGGgGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69680 0.75 0.186716
Target:  5'- -cGCGUcaGCUgCGCCUCGCcgucgaugGUGGCCGCCg -3'
miRNA:   3'- aaCGUA--CGA-GCGGGGUG--------CACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70782 0.67 0.554748
Target:  5'- -cGCGcGcCUCcgGCaCCgGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUaC-GAG--CG-GGgUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70924 0.73 0.245814
Target:  5'- -cGCGUGCUggcgcugcacgacggCGCCUucucggcggugCGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUACGA---------------GCGGG-----------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 71666 0.66 0.604432
Target:  5'- aUGCAcacgCGCgCCACG-GGCCGCg -3'
miRNA:   3'- aACGUacgaGCGgGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 71933 0.69 0.450779
Target:  5'- --uCAUGUUCaGCaCCagcgagCGCGUGGCCGCCu -3'
miRNA:   3'- aacGUACGAG-CG-GG------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 72005 0.67 0.54201
Target:  5'- -gGCcguUGCUgaagaccacgucggCGCCCCGCGcGGgCGCCc -3'
miRNA:   3'- aaCGu--ACGA--------------GCGGGGUGCaCCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 72817 0.69 0.468939
Target:  5'- -----aGCUCGCcggcgCCCACG-GGCCGCUu -3'
miRNA:   3'- aacguaCGAGCG-----GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 73114 0.66 0.62449
Target:  5'- -cGCcgGCggcgCGCCCgCGCG-GGuuGCa -3'
miRNA:   3'- aaCGuaCGa---GCGGG-GUGCaCCggCGg -5'
29515 3' -61.4 NC_006151.1 + 73951 0.81 0.074445
Target:  5'- gUGCGUGCgcaUGUCCCGCGUGGCCaCCg -3'
miRNA:   3'- aACGUACGa--GCGGGGUGCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 75339 0.71 0.358423
Target:  5'- -gGCGUGCUCGaaggUCACGUGGCagggcaCGCCg -3'
miRNA:   3'- aaCGUACGAGCgg--GGUGCACCG------GCGG- -5'
29515 3' -61.4 NC_006151.1 + 75405 0.69 0.445407
Target:  5'- gUGCGUGCgcggguccgggagGCCCgGCGUGGgCGCg -3'
miRNA:   3'- aACGUACGag-----------CGGGgUGCACCgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.