miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 107101 0.7 0.415659
Target:  5'- -cGCGUGCUCuggGCgCCGCccGaGCCGCCg -3'
miRNA:   3'- aaCGUACGAG---CGgGGUGcaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 51180 0.69 0.424282
Target:  5'- gUGCAggGCcCGCUCCACGacgagGGUgGCCa -3'
miRNA:   3'- aACGUa-CGaGCGGGGUGCa----CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 7090 0.69 0.440957
Target:  5'- uUUGCAUGCccggccCGCUCUGCGgccaucuUGGCCGCg -3'
miRNA:   3'- -AACGUACGa-----GCGGGGUGC-------ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 769 0.69 0.441845
Target:  5'- -gGCucccCUCGCgCCACGcGGUCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGgGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 75405 0.69 0.445407
Target:  5'- gUGCGUGCgcggguccgggagGCCCgGCGUGGgCGCg -3'
miRNA:   3'- aACGUACGag-----------CGGGgUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 71933 0.69 0.450779
Target:  5'- --uCAUGUUCaGCaCCagcgagCGCGUGGCCGCCu -3'
miRNA:   3'- aacGUACGAG-CG-GG------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 92655 0.69 0.450779
Target:  5'- -gGCAaggcGCUCGCCCUGCugccGGCgGCCg -3'
miRNA:   3'- aaCGUa---CGAGCGGGGUGca--CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 117003 0.69 0.450779
Target:  5'- -cGCAgcaccacgcGCUC-CCCCGCGggcccgGGCCGCa -3'
miRNA:   3'- aaCGUa--------CGAGcGGGGUGCa-----CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 58856 0.69 0.459811
Target:  5'- -cGCGUggaGCUCGCCCgGCGcgccgGGuCCGUCc -3'
miRNA:   3'- aaCGUA---CGAGCGGGgUGCa----CC-GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 141597 0.69 0.459811
Target:  5'- -gGCGagaGC-CGCCCgGCGaGGCUGCCg -3'
miRNA:   3'- aaCGUa--CGaGCGGGgUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 102857 0.69 0.459811
Target:  5'- -gGCGcGCagCGCUuCCGCGUGGCCaacGCCg -3'
miRNA:   3'- aaCGUaCGa-GCGG-GGUGCACCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 137710 0.69 0.466191
Target:  5'- -cGCGUGUgcaCGCCCUGCcgucgccguacgcgGUGGCCGgCg -3'
miRNA:   3'- aaCGUACGa--GCGGGGUG--------------CACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 72817 0.69 0.468939
Target:  5'- -----aGCUCGCcggcgCCCACG-GGCCGCUu -3'
miRNA:   3'- aacguaCGAGCG-----GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39003 0.69 0.468939
Target:  5'- -cGCGccGCggCGCCCCGCuccGCCGCCg -3'
miRNA:   3'- aaCGUa-CGa-GCGGGGUGcacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64509 0.69 0.468939
Target:  5'- -gGCggGCgcgCGCCgCCAaa-GGCCGCCg -3'
miRNA:   3'- aaCGuaCGa--GCGG-GGUgcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107482 0.68 0.478158
Target:  5'- -aGCGcGCUgccgcUGCCCC-CGUcGCCGCCg -3'
miRNA:   3'- aaCGUaCGA-----GCGGGGuGCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 120336 0.68 0.478158
Target:  5'- -cGCc-GCgCGCgCCCGCGUGGCCGg- -3'
miRNA:   3'- aaCGuaCGaGCG-GGGUGCACCGGCgg -5'
29515 3' -61.4 NC_006151.1 + 86324 0.68 0.478158
Target:  5'- -gGcCGUGCUCGCCCgCGcCGUGGgC-CCg -3'
miRNA:   3'- aaC-GUACGAGCGGG-GU-GCACCgGcGG- -5'
29515 3' -61.4 NC_006151.1 + 115649 0.68 0.478158
Target:  5'- -aGCAUGUcgCGgCCgauggucguCACgGUGGCCGCCa -3'
miRNA:   3'- aaCGUACGa-GCgGG---------GUG-CACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 51274 0.68 0.478158
Target:  5'- -gGCAUcacgaGCgCGCCCU-CGggGGCCGCCg -3'
miRNA:   3'- aaCGUA-----CGaGCGGGGuGCa-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.