Results 61 - 80 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 107101 | 0.7 | 0.415659 |
Target: 5'- -cGCGUGCUCuggGCgCCGCccGaGCCGCCg -3' miRNA: 3'- aaCGUACGAG---CGgGGUGcaC-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 71933 | 0.69 | 0.450779 |
Target: 5'- --uCAUGUUCaGCaCCagcgagCGCGUGGCCGCCu -3' miRNA: 3'- aacGUACGAG-CG-GG------GUGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 64509 | 0.69 | 0.468939 |
Target: 5'- -gGCggGCgcgCGCCgCCAaa-GGCCGCCg -3' miRNA: 3'- aaCGuaCGa--GCGG-GGUgcaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 39003 | 0.69 | 0.468939 |
Target: 5'- -cGCGccGCggCGCCCCGCuccGCCGCCg -3' miRNA: 3'- aaCGUa-CGa-GCGGGGUGcacCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 72817 | 0.69 | 0.468939 |
Target: 5'- -----aGCUCGCcggcgCCCACG-GGCCGCUu -3' miRNA: 3'- aacguaCGAGCG-----GGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 137710 | 0.69 | 0.466191 |
Target: 5'- -cGCGUGUgcaCGCCCUGCcgucgccguacgcgGUGGCCGgCg -3' miRNA: 3'- aaCGUACGa--GCGGGGUG--------------CACCGGCgG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 141597 | 0.69 | 0.459811 |
Target: 5'- -gGCGagaGC-CGCCCgGCGaGGCUGCCg -3' miRNA: 3'- aaCGUa--CGaGCGGGgUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 102857 | 0.69 | 0.459811 |
Target: 5'- -gGCGcGCagCGCUuCCGCGUGGCCaacGCCg -3' miRNA: 3'- aaCGUaCGa-GCGG-GGUGCACCGG---CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 58856 | 0.69 | 0.459811 |
Target: 5'- -cGCGUggaGCUCGCCCgGCGcgccgGGuCCGUCc -3' miRNA: 3'- aaCGUA---CGAGCGGGgUGCa----CC-GGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 92655 | 0.69 | 0.450779 |
Target: 5'- -gGCAaggcGCUCGCCCUGCugccGGCgGCCg -3' miRNA: 3'- aaCGUa---CGAGCGGGGUGca--CCGgCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 75405 | 0.69 | 0.445407 |
Target: 5'- gUGCGUGCgcggguccgggagGCCCgGCGUGGgCGCg -3' miRNA: 3'- aACGUACGag-----------CGGGgUGCACCgGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 769 | 0.69 | 0.441845 |
Target: 5'- -gGCucccCUCGCgCCACGcGGUCGCCg -3' miRNA: 3'- aaCGuac-GAGCGgGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 7090 | 0.69 | 0.440957 |
Target: 5'- uUUGCAUGCccggccCGCUCUGCGgccaucuUGGCCGCg -3' miRNA: 3'- -AACGUACGa-----GCGGGGUGC-------ACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 51180 | 0.69 | 0.424282 |
Target: 5'- gUGCAggGCcCGCUCCACGacgagGGUgGCCa -3' miRNA: 3'- aACGUa-CGaGCGGGGUGCa----CCGgCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 117003 | 0.69 | 0.450779 |
Target: 5'- -cGCAgcaccacgcGCUC-CCCCGCGggcccgGGCCGCa -3' miRNA: 3'- aaCGUa--------CGAGcGGGGUGCa-----CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 38034 | 0.68 | 0.487466 |
Target: 5'- cUGCccGCgccCGCCCgCGCcccGGCCGCCc -3' miRNA: 3'- aACGuaCGa--GCGGG-GUGca-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 107595 | 0.68 | 0.496858 |
Target: 5'- -cGCcaaGCUgGCCCCGcCG-GcGCCGCCg -3' miRNA: 3'- aaCGua-CGAgCGGGGU-GCaC-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 50316 | 0.68 | 0.493092 |
Target: 5'- cUGCAggccaacgagacgGC-CGCCCgGCGccUGGCCGCg -3' miRNA: 3'- aACGUa------------CGaGCGGGgUGC--ACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 52368 | 0.68 | 0.494032 |
Target: 5'- -cGCcgGCgCGCCCCcggggcccgcggggGCGgcggGcGCCGCCg -3' miRNA: 3'- aaCGuaCGaGCGGGG--------------UGCa---C-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 3620 | 0.68 | 0.496858 |
Target: 5'- -gGCcgugGC-CGuCCCCGCGgagGGCCGCg -3' miRNA: 3'- aaCGua--CGaGC-GGGGUGCa--CCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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