Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 79097 | 0.71 | 0.335639 |
Target: 5'- -cGCGaGCgagCGCCCCuccguCGUGGCUggGCCa -3' miRNA: 3'- aaCGUaCGa--GCGGGGu----GCACCGG--CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 78735 | 0.66 | 0.634531 |
Target: 5'- -cGCGcGCUgCGgCCCACGU--CCGCCg -3' miRNA: 3'- aaCGUaCGA-GCgGGGUGCAccGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 77523 | 0.7 | 0.407144 |
Target: 5'- -gGCGcGcCUCGgCCgCGCGUgGGCCGCCc -3' miRNA: 3'- aaCGUaC-GAGCgGG-GUGCA-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 77283 | 0.66 | 0.62449 |
Target: 5'- -cGCucacccauuUGC-CGCgCCGCGUGugcccGCCGCCa -3' miRNA: 3'- aaCGu--------ACGaGCGgGGUGCAC-----CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 75405 | 0.69 | 0.445407 |
Target: 5'- gUGCGUGCgcggguccgggagGCCCgGCGUGGgCGCg -3' miRNA: 3'- aACGUACGag-----------CGGGgUGCACCgGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 75339 | 0.71 | 0.358423 |
Target: 5'- -gGCGUGCUCGaaggUCACGUGGCagggcaCGCCg -3' miRNA: 3'- aaCGUACGAGCgg--GGUGCACCG------GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 73951 | 0.81 | 0.074445 |
Target: 5'- gUGCGUGCgcaUGUCCCGCGUGGCCaCCg -3' miRNA: 3'- aACGUACGa--GCGGGGUGCACCGGcGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 73114 | 0.66 | 0.62449 |
Target: 5'- -cGCcgGCggcgCGCCCgCGCG-GGuuGCa -3' miRNA: 3'- aaCGuaCGa---GCGGG-GUGCaCCggCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 72817 | 0.69 | 0.468939 |
Target: 5'- -----aGCUCGCcggcgCCCACG-GGCCGCUu -3' miRNA: 3'- aacguaCGAGCG-----GGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 72005 | 0.67 | 0.54201 |
Target: 5'- -gGCcguUGCUgaagaccacgucggCGCCCCGCGcGGgCGCCc -3' miRNA: 3'- aaCGu--ACGA--------------GCGGGGUGCaCCgGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 71933 | 0.69 | 0.450779 |
Target: 5'- --uCAUGUUCaGCaCCagcgagCGCGUGGCCGCCu -3' miRNA: 3'- aacGUACGAG-CG-GG------GUGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 71666 | 0.66 | 0.604432 |
Target: 5'- aUGCAcacgCGCgCCACG-GGCCGCg -3' miRNA: 3'- aACGUacgaGCGgGGUGCaCCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 70924 | 0.73 | 0.245814 |
Target: 5'- -cGCGUGCUggcgcugcacgacggCGCCUucucggcggugCGCGUGGCCGUCg -3' miRNA: 3'- aaCGUACGA---------------GCGGG-----------GUGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 70782 | 0.67 | 0.554748 |
Target: 5'- -cGCGcGcCUCcgGCaCCgGCGUGGCCGUCg -3' miRNA: 3'- aaCGUaC-GAG--CG-GGgUGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69680 | 0.75 | 0.186716 |
Target: 5'- -cGCGUcaGCUgCGCCUCGCcgucgaugGUGGCCGCCg -3' miRNA: 3'- aaCGUA--CGA-GCGGGGUG--------CACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69646 | 0.66 | 0.64457 |
Target: 5'- -cGCGUGCggCGCCgC-CG-GGUCGUCg -3' miRNA: 3'- aaCGUACGa-GCGGgGuGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69544 | 0.72 | 0.30006 |
Target: 5'- cUGCAUcaGCcCGCUcgCCACGUGGCUGCg -3' miRNA: 3'- aACGUA--CGaGCGG--GGUGCACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69285 | 0.68 | 0.496858 |
Target: 5'- -gGCG-GCgCGCCaCCAgGgacacgGGCCGCCg -3' miRNA: 3'- aaCGUaCGaGCGG-GGUgCa-----CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69191 | 0.71 | 0.357646 |
Target: 5'- -cGCGccagggGCUCGCuccggggCCCGCGccGGCCGCCc -3' miRNA: 3'- aaCGUa-----CGAGCG-------GGGUGCa-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 68122 | 0.68 | 0.496858 |
Target: 5'- -cGCAcgaGCUCGCCgCCgcucccgcggaGCGUggucguggucacGGCCGCCa -3' miRNA: 3'- aaCGUa--CGAGCGG-GG-----------UGCA------------CCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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