miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 60414 0.67 0.564606
Target:  5'- -cGCAcgGCccagCGgCCCACGUccucggggGGCCGCUg -3'
miRNA:   3'- aaCGUa-CGa---GCgGGGUGCA--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97846 0.67 0.563618
Target:  5'- gUGCGcGCgcagCGCgucgUCCGCGUucucggcGGCCGCCa -3'
miRNA:   3'- aACGUaCGa---GCG----GGGUGCA-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 115207 0.67 0.554748
Target:  5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3'
miRNA:   3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58130 0.67 0.554748
Target:  5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3'
miRNA:   3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 97650 0.67 0.57451
Target:  5'- gUGCGcGC-CGCCuCCugGUcGCCGCg -3'
miRNA:   3'- aACGUaCGaGCGG-GGugCAcCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 57502 0.67 0.57451
Target:  5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3'
miRNA:   3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 71666 0.66 0.604432
Target:  5'- aUGCAcacgCGCgCCACG-GGCCGCg -3'
miRNA:   3'- aACGUacgaGCGgGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 36993 0.66 0.604432
Target:  5'- -gGCccGCUCGCCCUcCGccccccgGGCCcccGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGGGuGCa------CCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 84258 0.66 0.604432
Target:  5'- -aGCAUGCgcgUGCUCgACGUGaCgCGCCu -3'
miRNA:   3'- aaCGUACGa--GCGGGgUGCACcG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 100938 0.66 0.594429
Target:  5'- gUGCcccUGCUCGCgCaaACGUGGgUGCCc -3'
miRNA:   3'- aACGu--ACGAGCG-GggUGCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58911 0.66 0.594429
Target:  5'- -cGCAcacgcGCUC-CCCCGcCGcGGCCGUCa -3'
miRNA:   3'- aaCGUa----CGAGcGGGGU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 110184 0.66 0.594429
Target:  5'- -cGCGUGC-CGCCUgauaGCGc-GCCGCCu -3'
miRNA:   3'- aaCGUACGaGCGGGg---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 119461 0.66 0.594429
Target:  5'- -cGaCGUGgaCGCCgugcgCUACGUGGCCGgCa -3'
miRNA:   3'- aaC-GUACgaGCGG-----GGUGCACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 26334 0.66 0.594429
Target:  5'- -gGCGagGCcCGCCUCACGgggcggcggcgGGCCGCg -3'
miRNA:   3'- aaCGUa-CGaGCGGGGUGCa----------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 117247 0.66 0.59343
Target:  5'- -cGUcgGCggGCCCgaggcgcgggccgCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGagCGGG-------------GUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39535 0.66 0.59343
Target:  5'- -gGCcUGCuUCG-CCCGCGUGGaggccuccuucgcCCGCCu -3'
miRNA:   3'- aaCGuACG-AGCgGGGUGCACC-------------GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 103472 0.67 0.584453
Target:  5'- -gGCAcggUGCUCGCggcgcuguggCgCCugGUGGCgCGCUa -3'
miRNA:   3'- aaCGU---ACGAGCG----------G-GGugCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 25111 0.67 0.584453
Target:  5'- cUGCGUGCgagCGCUggGCGUGGaCGCg -3'
miRNA:   3'- aACGUACGa--GCGGggUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 18837 0.67 0.584453
Target:  5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3'
miRNA:   3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.