miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 58300 0.66 0.634531
Target:  5'- -cGCucauCUCGCCCCgGCGUuucagcggcGGCgCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGGGG-UGCA---------CCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 7256 1.08 0.000904
Target:  5'- uUUGCAUGCUCGCCCCACGUGGCCGCCc -3'
miRNA:   3'- -AACGUACGAGCGGGGUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64319 0.66 0.631518
Target:  5'- -cGcCGUGCUgGCCucgcaCCACGUcggcgggaagcgcgGGCCGUCg -3'
miRNA:   3'- aaC-GUACGAgCGG-----GGUGCA--------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117084 0.66 0.631518
Target:  5'- -cGCGUGgUCGCgUCCACGccGGCCucgugcgucaccagGCCg -3'
miRNA:   3'- aaCGUACgAGCG-GGGUGCa-CCGG--------------CGG- -5'
29515 3' -61.4 NC_006151.1 + 58236 0.66 0.632522
Target:  5'- -aGCAcGCgCGCCgCCACGcgccggcccgcgGGCCGCa -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCa-----------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 57110 0.66 0.634531
Target:  5'- -aGCA-GCgcgCGCCgCCGCGcccggcGGUCGCCc -3'
miRNA:   3'- aaCGUaCGa--GCGG-GGUGCa-----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 125376 0.66 0.634531
Target:  5'- -cGaCAUGCUgGgCCgCAuCGcGGCCGCCu -3'
miRNA:   3'- aaC-GUACGAgCgGG-GU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 78735 0.66 0.634531
Target:  5'- -cGCGcGCUgCGgCCCACGU--CCGCCg -3'
miRNA:   3'- aaCGUaCGA-GCgGGGUGCAccGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 106803 0.66 0.634531
Target:  5'- -gGCgGUGCUCgucgggGCCCCGC-UGGUgauCGCCa -3'
miRNA:   3'- aaCG-UACGAG------CGGGGUGcACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 122730 0.66 0.634531
Target:  5'- -aGCAcuuUGaC-CGCgCCCGCGcGGCCGCg -3'
miRNA:   3'- aaCGU---AC-GaGCG-GGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 129519 0.66 0.634531
Target:  5'- -aGCc-GCUUGCCgCCgACGggggggcccggGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GG-UGCa----------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 89669 0.66 0.64457
Target:  5'- -cGCGUGCUCggGCgCacaaagaGCGagacGGCCGCCg -3'
miRNA:   3'- aaCGUACGAG--CGgGg------UGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 98435 0.66 0.634531
Target:  5'- -gGcCGUGCUCGCCgagaACcUGGCCgGCCu -3'
miRNA:   3'- aaC-GUACGAGCGGgg--UGcACCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 109260 0.66 0.634531
Target:  5'- -cGCugGCg-GCCCCgACGUcgcuGGCCGCCc -3'
miRNA:   3'- aaCGuaCGagCGGGG-UGCA----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 109536 0.66 0.638547
Target:  5'- -aGCAg---CGCCCCccggaggcgccguggACGUGGCCcgaGCCg -3'
miRNA:   3'- aaCGUacgaGCGGGG---------------UGCACCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 19367 0.66 0.64457
Target:  5'- -aGCGUGUagaGgCCCgugucguuggGCGUGGCcCGCCg -3'
miRNA:   3'- aaCGUACGag-CgGGG----------UGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 37942 0.66 0.64457
Target:  5'- -cGCAgcccgGCcgcgUGCCCCGCGagcUGGCggaCGCCu -3'
miRNA:   3'- aaCGUa----CGa---GCGGGGUGC---ACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 92171 0.66 0.64457
Target:  5'- -gGcCGUGCgCGCCgaCgGCGacggGGCCGCCg -3'
miRNA:   3'- aaC-GUACGaGCGG--GgUGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 104983 0.66 0.64457
Target:  5'- -cGCcgGcCUCGCUCaacauCGaccgGGCCGCCu -3'
miRNA:   3'- aaCGuaC-GAGCGGGgu---GCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 11020 0.66 0.64457
Target:  5'- -cGCccGCUCGCUCgC-CG-GGCCgGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGG-GuGCaCCGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.