Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29520 | 3' | -50.1 | NC_006151.1 | + | 49529 | 0.77 | 0.650279 |
Target: 5'- aCGAGGAGGGGGGaGgGGGGUggGAuGGa -3' miRNA: 3'- -GCUUUUUUCCCC-CgCCCCGaaUUuCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 8140 | 0.77 | 0.682089 |
Target: 5'- cCGGu--GGGGGGGCGGGuGC--AAAGGg -3' miRNA: 3'- -GCUuuuUUCCCCCGCCC-CGaaUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 44481 | 0.77 | 0.650279 |
Target: 5'- uGGAcgGGGGGGGUGGGGgaUGGuguGGGg -3' miRNA: 3'- gCUUuuUUCCCCCGCCCCgaAUU---UCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 29800 | 0.77 | 0.671517 |
Target: 5'- aGGGAGGGGaGGGGUGGuGGUggUAGAGGg -3' miRNA: 3'- gCUUUUUUC-CCCCGCC-CCGa-AUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 9581 | 0.76 | 0.72383 |
Target: 5'- aCGggGAAGGGGGGaaagggaaaCGGGGaaacgggGAAGGg -3' miRNA: 3'- -GCuuUUUUCCCCC---------GCCCCgaa----UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 142490 | 0.76 | 0.713497 |
Target: 5'- --nGAAAGGGGGGaacgaGGGGgUUGGGGGa -3' miRNA: 3'- gcuUUUUUCCCCCg----CCCCgAAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 110491 | 0.76 | 0.72383 |
Target: 5'- uGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3' miRNA: 3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 29636 | 0.76 | 0.72383 |
Target: 5'- gGGGAAuuGGGGGUGGGGgaaaUGGGGGg -3' miRNA: 3'- gCUUUUuuCCCCCGCCCCga--AUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 31400 | 0.76 | 0.72383 |
Target: 5'- ------cGGGGGGcCGGGGCgagggGAAGGg -3' miRNA: 3'- gcuuuuuUCCCCC-GCCCCGaa---UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 42868 | 0.76 | 0.734078 |
Target: 5'- aCGAuggucGAGGGGGCcgcgagggagaGGGGgUUAGAGGa -3' miRNA: 3'- -GCUuuu--UUCCCCCG-----------CCCCgAAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 110548 | 0.76 | 0.72383 |
Target: 5'- gGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3' miRNA: 3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 78385 | 0.76 | 0.71246 |
Target: 5'- gGGGAGGAGGGGGCGGccacggcGGCUcucGGGc -3' miRNA: 3'- gCUUUUUUCCCCCGCC-------CCGAauuUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 12344 | 0.75 | 0.789396 |
Target: 5'- gGggGAAGGaGGGGCGGGGagcgcgagcGGGa -3' miRNA: 3'- gCuuUUUUC-CCCCGCCCCgaauu----UCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 45592 | 0.75 | 0.754274 |
Target: 5'- cCGAGGGGgcGGGGGGagccccgaCGGGGCgggcgGAAGGg -3' miRNA: 3'- -GCUUUUU--UCCCCC--------GCCCCGaa---UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 27961 | 0.75 | 0.783668 |
Target: 5'- gGAGGGAGGGGGGaCGGGGa--GGAGu -3' miRNA: 3'- gCUUUUUUCCCCC-GCCCCgaaUUUCc -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 29447 | 0.75 | 0.793184 |
Target: 5'- gCGggGAGAGGGGacgcggagggaGCGGGcGCgccgggAGAGGa -3' miRNA: 3'- -GCuuUUUUCCCC-----------CGCCC-CGaa----UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 31423 | 0.75 | 0.783668 |
Target: 5'- gGGAAGGGGGGGGaCGGGGUg------ -3' miRNA: 3'- gCUUUUUUCCCCC-GCCCCGaauuucc -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 42724 | 0.75 | 0.774004 |
Target: 5'- -aGAGAGAGGGGGCGGGGa------- -3' miRNA: 3'- gcUUUUUUCCCCCGCCCCgaauuucc -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 110626 | 0.74 | 0.82075 |
Target: 5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3' miRNA: 3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 110586 | 0.74 | 0.82075 |
Target: 5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3' miRNA: 3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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