miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 92837 0.7 0.706953
Target:  5'- gGCAGcguGCAcGCCUCgGCGACG-GCCgCGg -3'
miRNA:   3'- -CGUC---UGUaCGGAGgUGUUGCuCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 92765 0.68 0.811831
Target:  5'- gGCAG-CGUccacGCCUCgGCGACGGccGCCCc -3'
miRNA:   3'- -CGUCuGUA----CGGAGgUGUUGCU--CGGGc -5'
29523 3' -55.5 NC_006151.1 + 92289 0.69 0.78471
Target:  5'- uGguGACGUGCagggcccgCUCCACGACGAgggugGCCa- -3'
miRNA:   3'- -CguCUGUACG--------GAGGUGUUGCU-----CGGgc -5'
29523 3' -55.5 NC_006151.1 + 89493 0.69 0.802945
Target:  5'- aGCGGcgGCGgcGCCUCCGCGggcgucgcgGCGAGCUCc -3'
miRNA:   3'- -CGUC--UGUa-CGGAGGUGU---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 89039 0.67 0.883449
Target:  5'- cGCuGGCGcggcGCUUCgGCGACGAggcGCCCGc -3'
miRNA:   3'- -CGuCUGUa---CGGAGgUGUUGCU---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 88115 0.77 0.352961
Target:  5'- gGCGGACAacggggGCCUCCGCGagcaggugcGCGAGCgCGa -3'
miRNA:   3'- -CGUCUGUa-----CGGAGGUGU---------UGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 87971 0.68 0.837466
Target:  5'- cGCGGACG-GCCagCCGCcGCGGGaCCuCGg -3'
miRNA:   3'- -CGUCUGUaCGGa-GGUGuUGCUC-GG-GC- -5'
29523 3' -55.5 NC_006151.1 + 87570 0.66 0.917953
Target:  5'- gGCGGACGUgcGCCgggcgaccgagcggcUCCGCgAugGAGgCCGu -3'
miRNA:   3'- -CGUCUGUA--CGG---------------AGGUG-UugCUCgGGC- -5'
29523 3' -55.5 NC_006151.1 + 86865 0.66 0.903468
Target:  5'- uGCGGACGcGCCcCgGCGGCGcGCUCa -3'
miRNA:   3'- -CGUCUGUaCGGaGgUGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 86229 0.7 0.736852
Target:  5'- cGCAGGCGgcgcgcgcgGCCUCgGCGuccGCGcGGCCCu -3'
miRNA:   3'- -CGUCUGUa--------CGGAGgUGU---UGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 85860 0.67 0.853623
Target:  5'- cCAGGCcgGCCUCgGCcGCGGccGCCuCGa -3'
miRNA:   3'- cGUCUGuaCGGAGgUGuUGCU--CGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 85579 0.73 0.553494
Target:  5'- gGCAGACGUcgcagcgcaggcGCaggCCGCAgcucACGGGCCCGa -3'
miRNA:   3'- -CGUCUGUA------------CGga-GGUGU----UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 85465 0.67 0.868967
Target:  5'- cGCGGACc-GCCUCCGgcGCG-GCCgCGg -3'
miRNA:   3'- -CGUCUGuaCGGAGGUguUGCuCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 85136 0.67 0.868967
Target:  5'- gGCGGcgcGCcgGCCUCCGCGuagGCGcGCgCGa -3'
miRNA:   3'- -CGUC---UGuaCGGAGGUGU---UGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 84982 0.66 0.903468
Target:  5'- --cGACGUcgGCgUCCACGugGAugauGCCCGc -3'
miRNA:   3'- cguCUGUA--CGgAGGUGUugCU----CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 84716 0.67 0.853623
Target:  5'- cGCAGcGCcgcgGCCaCCGCGGCcgccGAGCCCGu -3'
miRNA:   3'- -CGUC-UGua--CGGaGGUGUUG----CUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 84620 0.67 0.8614
Target:  5'- aGCAGGUgcGCCagCGCGugGAGCUCGc -3'
miRNA:   3'- -CGUCUGuaCGGagGUGUugCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 84490 0.7 0.706953
Target:  5'- cGCGGcCAcGCCUCCGCGggcACGAGCgaGa -3'
miRNA:   3'- -CGUCuGUaCGGAGGUGU---UGCUCGggC- -5'
29523 3' -55.5 NC_006151.1 + 84169 0.68 0.811831
Target:  5'- aGCGcGGCGUGgCgcCCGCGgcucaGCGGGCCCGc -3'
miRNA:   3'- -CGU-CUGUACgGa-GGUGU-----UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 83958 0.68 0.820553
Target:  5'- --cGGCG-GCCUCCGCGACGcGCgCGc -3'
miRNA:   3'- cguCUGUaCGGAGGUGUUGCuCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.