miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 141740 0.72 0.339114
Target:  5'- aGGGCGGa-GggGCGCG-GGGCgCGCg -3'
miRNA:   3'- gUCCGUCgaCuuCGCGCgCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 141698 0.73 0.289975
Target:  5'- -cGGCGGCUGGcGGCGgaCGCGGuGCCCGg -3'
miRNA:   3'- guCCGUCGACU-UCGC--GCGCC-UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 141631 0.7 0.427882
Target:  5'- gCGGGUcGCUGccgcggcGGCGCgGCGGGgcCCCGCg -3'
miRNA:   3'- -GUCCGuCGACu------UCGCG-CGCCU--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 141460 0.71 0.410736
Target:  5'- aGGGCGGuCUGGAGC-CGgGGGCgCCGa -3'
miRNA:   3'- gUCCGUC-GACUUCGcGCgCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 139738 0.69 0.468861
Target:  5'- -cGGCGGCgacagGAGGCGgaucguccggacgGCGGGCCCGa -3'
miRNA:   3'- guCCGUCGa----CUUCGCg------------CGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 139618 0.67 0.611647
Target:  5'- cCGGGCgcGGCUGGgggccauccggcgccGGCGCgggggucgcgGCGGGCgCGCc -3'
miRNA:   3'- -GUCCG--UCGACU---------------UCGCG----------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 139550 0.66 0.667542
Target:  5'- uCGGGgAGCgagGAgcGGCGCcCGG-UCCGCg -3'
miRNA:   3'- -GUCCgUCGa--CU--UCGCGcGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137918 0.66 0.677472
Target:  5'- -cGGCGGCUGccacGGGCGCcugcuccccuuuGgGGACgCGCc -3'
miRNA:   3'- guCCGUCGAC----UUCGCG------------CgCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 137786 0.72 0.342098
Target:  5'- gCAGGCcgugcuGCUGGAGCGgGacuucaucgagcccaUGGGCCCGUa -3'
miRNA:   3'- -GUCCGu-----CGACUUCGCgC---------------GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137539 0.71 0.410736
Target:  5'- uGGGCGGaCUGGGacGCGgGCGucCCCGCc -3'
miRNA:   3'- gUCCGUC-GACUU--CGCgCGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137281 0.69 0.48173
Target:  5'- gCGGGCAcGCUcGAGGCggccauGCGCGGguuccGCCgCGCg -3'
miRNA:   3'- -GUCCGU-CGA-CUUCG------CGCGCC-----UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 136990 0.7 0.454374
Target:  5'- cCGGGCGGCg--GGCGCGCGcGCaCgGCg -3'
miRNA:   3'- -GUCCGUCGacuUCGCGCGCcUG-GgCG- -5'
29526 3' -60.8 NC_006151.1 + 136651 0.72 0.339114
Target:  5'- gGGGC-GCUcgccccucggGGAGCGCGCGGcCgCCGCc -3'
miRNA:   3'- gUCCGuCGA----------CUUCGCGCGCCuG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 136409 0.68 0.548377
Target:  5'- --aGCGGCUac-GCGCGgGGcCCCGCg -3'
miRNA:   3'- gucCGUCGAcuuCGCGCgCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 135873 0.67 0.607657
Target:  5'- -uGGcCAGCguccGCGUGCGG-CCCGUg -3'
miRNA:   3'- guCC-GUCGacuuCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 135599 0.67 0.60666
Target:  5'- -cGGCGGCUcAuaagcccucccacGGC-CGCGGcGCCCGCa -3'
miRNA:   3'- guCCGUCGAcU-------------UCGcGCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 135488 0.66 0.697218
Target:  5'- gCGGGCcaGGC---GGCGCGCGGcCUCGg -3'
miRNA:   3'- -GUCCG--UCGacuUCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 135144 0.67 0.63562
Target:  5'- aCGGGCAGacccagcccGGCGgGCGcGGCCCGg -3'
miRNA:   3'- -GUCCGUCgacu-----UCGCgCGC-CUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 135107 0.73 0.283429
Target:  5'- gCGGGCGGCgguAGCGCGCGGGgCgGg -3'
miRNA:   3'- -GUCCGUCGacuUCGCGCGCCUgGgCg -5'
29526 3' -60.8 NC_006151.1 + 135012 0.7 0.454374
Target:  5'- gGGGC-GCgggGggGCaGCaGCGGGgCCGCg -3'
miRNA:   3'- gUCCGuCGa--CuuCG-CG-CGCCUgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.