miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 5' -60 NC_006151.1 + 77238 0.66 0.707883
Target:  5'- cGGGAGGcgcccCCCGG-CGGGUUuaaaggagUGGUCGCg -3'
miRNA:   3'- -UUCUCCu----GGGUCaGCCCGA--------ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 6113 0.66 0.707883
Target:  5'- aAGGAGGACggggCGGccUCGuGGCUccGGCCGCg -3'
miRNA:   3'- -UUCUCCUGg---GUC--AGC-CCGAa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 133146 0.66 0.707883
Target:  5'- cAGAgGGACUCGGcggcggcgCGGGCgugggccucGGCCACg -3'
miRNA:   3'- uUCU-CCUGGGUCa-------GCCCGaa-------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 75420 0.66 0.688873
Target:  5'- cGGGAGG-CCCGGcgUGGGCgcgaagcugccggcgUGGCgCGCg -3'
miRNA:   3'- -UUCUCCuGGGUCa-GCCCGa--------------ACCG-GUG- -5'
29526 5' -60 NC_006151.1 + 39751 0.66 0.677787
Target:  5'- -cGGGGACCCGGacuuugacgCGGGC---GCCGCc -3'
miRNA:   3'- uuCUCCUGGGUCa--------GCCCGaacCGGUG- -5'
29526 5' -60 NC_006151.1 + 96659 0.66 0.677787
Target:  5'- -cGAGGGCCCGGgcgacguccUCGGGgcaGGCgGCg -3'
miRNA:   3'- uuCUCCUGGGUC---------AGCCCgaaCCGgUG- -5'
29526 5' -60 NC_006151.1 + 135010 0.66 0.677787
Target:  5'- -cGGGGGCgCGGggGGGCagcagcggGGCCGCg -3'
miRNA:   3'- uuCUCCUGgGUCagCCCGaa------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 91753 0.66 0.677787
Target:  5'- cGAGcGGGCUCGGgCGGGCggugUGcGCCAg -3'
miRNA:   3'- -UUCuCCUGGGUCaGCCCGa---AC-CGGUg -5'
29526 5' -60 NC_006151.1 + 31667 0.66 0.667669
Target:  5'- gAGGAGGGCggAGgaaGGGCcgGGCCGCc -3'
miRNA:   3'- -UUCUCCUGggUCag-CCCGaaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 8217 0.67 0.647356
Target:  5'- gAAGAGGGCCgGGUCcccuucccggcgGGGag-GGCCGg -3'
miRNA:   3'- -UUCUCCUGGgUCAG------------CCCgaaCCGGUg -5'
29526 5' -60 NC_006151.1 + 50877 0.67 0.647356
Target:  5'- ---cGGACCCcGUCccgGGGCc-GGCCGCg -3'
miRNA:   3'- uucuCCUGGGuCAG---CCCGaaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 83025 0.67 0.615799
Target:  5'- -cGAGGGCCCcaGGUCGacgguggagacGcgcagcggcagcaGCUUGGCCACg -3'
miRNA:   3'- uuCUCCUGGG--UCAGC-----------C-------------CGAACCGGUG- -5'
29526 5' -60 NC_006151.1 + 102283 0.67 0.60665
Target:  5'- cGGAGcgcGGCCCGGcCGGGgacuuugUGGCCGCc -3'
miRNA:   3'- uUCUC---CUGGGUCaGCCCga-----ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 79208 0.67 0.60665
Target:  5'- aGAGGGGAuuCCCGGUCGcucGGCcccaGCCGCg -3'
miRNA:   3'- -UUCUCCU--GGGUCAGC---CCGaac-CGGUG- -5'
29526 5' -60 NC_006151.1 + 66858 0.67 0.60665
Target:  5'- cGAGAGGGCCgGGgCGGcGCgaagGGCgCGCc -3'
miRNA:   3'- -UUCUCCUGGgUCaGCC-CGaa--CCG-GUG- -5'
29526 5' -60 NC_006151.1 + 3933 0.67 0.596501
Target:  5'- -cGGGGGCaggCCGGgcgCGGGCUccgcgggcccgGGCCGCg -3'
miRNA:   3'- uuCUCCUG---GGUCa--GCCCGAa----------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 18764 0.67 0.596501
Target:  5'- -cGGGGuGCCCGGggccCGGGCcggGGCCGu -3'
miRNA:   3'- uuCUCC-UGGGUCa---GCCCGaa-CCGGUg -5'
29526 5' -60 NC_006151.1 + 41502 0.68 0.566239
Target:  5'- cGAGGGGAgCCAaUgGGGCggGcGCCGCg -3'
miRNA:   3'- -UUCUCCUgGGUcAgCCCGaaC-CGGUG- -5'
29526 5' -60 NC_006151.1 + 4786 0.68 0.566239
Target:  5'- ---cGGGCCCGGcCGcGGCgcgguagcgGGCCGCg -3'
miRNA:   3'- uucuCCUGGGUCaGC-CCGaa-------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 49488 0.68 0.556235
Target:  5'- -cGuGGACUgAGUCGGGCgUGcGCgCACa -3'
miRNA:   3'- uuCuCCUGGgUCAGCCCGaAC-CG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.