miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 5' -60 NC_006151.1 + 141975 0.72 0.357195
Target:  5'- --cGGGAUCCGGUCGGGC--GGCC-Cg -3'
miRNA:   3'- uucUCCUGGGUCAGCCCGaaCCGGuG- -5'
29526 5' -60 NC_006151.1 + 135010 0.66 0.677787
Target:  5'- -cGGGGGCgCGGggGGGCagcagcggGGCCGCg -3'
miRNA:   3'- uuCUCCUGgGUCagCCCGaa------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 133400 0.72 0.365119
Target:  5'- --cGGGGCCgAG-CGGGCggucUUGGCCGCg -3'
miRNA:   3'- uucUCCUGGgUCaGCCCG----AACCGGUG- -5'
29526 5' -60 NC_006151.1 + 133146 0.66 0.707883
Target:  5'- cAGAgGGACUCGGcggcggcgCGGGCgugggccucGGCCACg -3'
miRNA:   3'- uUCU-CCUGGGUCa-------GCCCGaa-------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 131108 0.76 0.203416
Target:  5'- cGGGGGGCCCGGcCGcGGCgcgggaGGCCGCg -3'
miRNA:   3'- uUCUCCUGGGUCaGC-CCGaa----CCGGUG- -5'
29526 5' -60 NC_006151.1 + 127540 0.71 0.398007
Target:  5'- --cGGGGCCCAGg-GGGCgucgucgucgUGGCCGCc -3'
miRNA:   3'- uucUCCUGGGUCagCCCGa---------ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 127374 0.69 0.526555
Target:  5'- -cGGGGACCgCGGggGuGGCgggGGCCGCg -3'
miRNA:   3'- uuCUCCUGG-GUCagC-CCGaa-CCGGUG- -5'
29526 5' -60 NC_006151.1 + 112574 0.73 0.305161
Target:  5'- gAGGAGGACUCGcccgCGGGCUUcguggaGGCCGCc -3'
miRNA:   3'- -UUCUCCUGGGUca--GCCCGAA------CCGGUG- -5'
29526 5' -60 NC_006151.1 + 103872 0.71 0.415148
Target:  5'- cGAGGGGACgCUGGUCGaGGCgc-GCCACc -3'
miRNA:   3'- -UUCUCCUG-GGUCAGC-CCGaacCGGUG- -5'
29526 5' -60 NC_006151.1 + 102691 0.69 0.478517
Target:  5'- cGGGGGcGCCCGGcgCGGGCggcgcGGCCGa -3'
miRNA:   3'- uUCUCC-UGGGUCa-GCCCGaa---CCGGUg -5'
29526 5' -60 NC_006151.1 + 102283 0.67 0.60665
Target:  5'- cGGAGcgcGGCCCGGcCGGGgacuuugUGGCCGCc -3'
miRNA:   3'- uUCUC---CUGGGUCaGCCCga-----ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 96659 0.66 0.677787
Target:  5'- -cGAGGGCCCGGgcgacguccUCGGGgcaGGCgGCg -3'
miRNA:   3'- uuCUCCUGGGUC---------AGCCCgaaCCGgUG- -5'
29526 5' -60 NC_006151.1 + 91753 0.66 0.677787
Target:  5'- cGAGcGGGCUCGGgCGGGCggugUGcGCCAg -3'
miRNA:   3'- -UUCuCCUGGGUCaGCCCGa---AC-CGGUg -5'
29526 5' -60 NC_006151.1 + 83432 0.69 0.487959
Target:  5'- cGGGGGGCUCcc-CGGGCagcgUGGCCGCc -3'
miRNA:   3'- uUCUCCUGGGucaGCCCGa---ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 83025 0.67 0.615799
Target:  5'- -cGAGGGCCCcaGGUCGacgguggagacGcgcagcggcagcaGCUUGGCCACg -3'
miRNA:   3'- uuCUCCUGGG--UCAGC-----------C-------------CGAACCGGUG- -5'
29526 5' -60 NC_006151.1 + 79208 0.67 0.60665
Target:  5'- aGAGGGGAuuCCCGGUCGcucGGCcccaGCCGCg -3'
miRNA:   3'- -UUCUCCU--GGGUCAGC---CCGaac-CGGUG- -5'
29526 5' -60 NC_006151.1 + 79103 0.69 0.516791
Target:  5'- -cGAGcGCCCcuccGUCGuGGCUgGGCCACg -3'
miRNA:   3'- uuCUCcUGGGu---CAGC-CCGAaCCGGUG- -5'
29526 5' -60 NC_006151.1 + 77238 0.66 0.707883
Target:  5'- cGGGAGGcgcccCCCGG-CGGGUUuaaaggagUGGUCGCg -3'
miRNA:   3'- -UUCUCCu----GGGUCaGCCCGA--------ACCGGUG- -5'
29526 5' -60 NC_006151.1 + 75420 0.66 0.688873
Target:  5'- cGGGAGG-CCCGGcgUGGGCgcgaagcugccggcgUGGCgCGCg -3'
miRNA:   3'- -UUCUCCuGGGUCa-GCCCGa--------------ACCG-GUG- -5'
29526 5' -60 NC_006151.1 + 66858 0.67 0.60665
Target:  5'- cGAGAGGGCCgGGgCGGcGCgaagGGCgCGCc -3'
miRNA:   3'- -UUCUCCUGGgUCaGCC-CGaa--CCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.