miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 139809 0.71 0.19493
Target:  5'- gCGCGCCGCCgUcuccgcgacgcaCGCGCGGGucGGCGcGa -3'
miRNA:   3'- -GCGCGGCGGgA------------GCGCGCCC--CCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 139666 0.66 0.406359
Target:  5'- gCGCGCCGCCCgacaggcccugCGgcaGCGGcGGCGg-- -3'
miRNA:   3'- -GCGCGGCGGGa----------GCg--CGCCcCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 139350 0.69 0.279414
Target:  5'- gGCGCUGUaCCUCuGCcuGCugguaGGGGGCGUGUu -3'
miRNA:   3'- gCGCGGCG-GGAG-CG--CG-----CCCCCGCACA- -5'
29528 5' -67.5 NC_006151.1 + 139287 0.74 0.11015
Target:  5'- aCGCGCCGCCCUCG-GCGucugcGGcGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGAGCgCGCc----CC-CGCACa -5'
29528 5' -67.5 NC_006151.1 + 138712 0.69 0.255875
Target:  5'- gGCGCUGCgCgcCGCGCGcGGGuCGUGUa -3'
miRNA:   3'- gCGCGGCGgGa-GCGCGCcCCC-GCACA- -5'
29528 5' -67.5 NC_006151.1 + 138607 0.69 0.261604
Target:  5'- gGCGCUGCCgCUCGgcgaggacgcCGcCGGGGGCGc-- -3'
miRNA:   3'- gCGCGGCGG-GAGC----------GC-GCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 137492 0.68 0.291186
Target:  5'- aCGaCGCCGCCCUCGCcgacuuuggcgccGCGccGGGCGa-- -3'
miRNA:   3'- -GC-GCGGCGGGAGCG-------------CGCc-CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 136961 0.69 0.256444
Target:  5'- uGCGCCGCCUgcuggagcuggccgcCGCGcCGGGcGGCGg-- -3'
miRNA:   3'- gCGCGGCGGGa--------------GCGC-GCCC-CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 136848 0.68 0.32469
Target:  5'- gGcCGCCGgCCUCGCGCGcc-GCGUGa -3'
miRNA:   3'- gC-GCGGCgGGAGCGCGCcccCGCACa -5'
29528 5' -67.5 NC_006151.1 + 135076 0.71 0.181817
Target:  5'- -cCGCC-UCCUCGgGCGGGGGCGg-- -3'
miRNA:   3'- gcGCGGcGGGAGCgCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 134722 0.67 0.331587
Target:  5'- cCGCGUgGCCUUCGCGCGGGacuuUGUc -3'
miRNA:   3'- -GCGCGgCGGGAGCGCGCCCccgcACA- -5'
29528 5' -67.5 NC_006151.1 + 134316 0.66 0.390578
Target:  5'- aCGcCGCUGCgCCUCGCGCcGGGcaucgccacGGaCGUGc -3'
miRNA:   3'- -GC-GCGGCG-GGAGCGCG-CCC---------CC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 134177 0.7 0.241463
Target:  5'- gGCGCUGCCCaccggauacgCgaugcucgucgcgcaGCGCGGGGGCGg-- -3'
miRNA:   3'- gCGCGGCGGGa---------G---------------CGCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 133779 0.85 0.017132
Target:  5'- aCGCGCCGCCC-CGCGgGGGaGGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGaGCGCgCCC-CCGCACa -5'
29528 5' -67.5 NC_006151.1 + 131498 0.66 0.375202
Target:  5'- gGUGCaccaggaGCCC-CGCGCGGGGGaaCGg-- -3'
miRNA:   3'- gCGCGg------CGGGaGCGCGCCCCC--GCaca -5'
29528 5' -67.5 NC_006151.1 + 130907 0.7 0.223644
Target:  5'- cCGuCGCCGUCgUCGguggccgggccCGCGGGGGCGg-- -3'
miRNA:   3'- -GC-GCGGCGGgAGC-----------GCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 130533 0.7 0.233986
Target:  5'- uCGCGUacaCGCCCcCGCGCGaGGGCGg-- -3'
miRNA:   3'- -GCGCG---GCGGGaGCGCGCcCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 130403 0.67 0.33859
Target:  5'- aGCGCCucGCCCgcgaGCGCGGGcGCGc-- -3'
miRNA:   3'- gCGCGG--CGGGag--CGCGCCCcCGCaca -5'
29528 5' -67.5 NC_006151.1 + 128596 0.67 0.367669
Target:  5'- uCGCGCgGCCCgCGCGCcacccGcGGCGUGc -3'
miRNA:   3'- -GCGCGgCGGGaGCGCGc----CcCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 128059 0.66 0.390578
Target:  5'- aGCGgCGgCU--GCGCGGGGGCGa-- -3'
miRNA:   3'- gCGCgGCgGGagCGCGCCCCCGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.