miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 140461 0.72 0.432735
Target:  5'- --gGCGGGa-UCAUGGACGCGCUgGAc -3'
miRNA:   3'- augCGCCUcgAGUACCUGCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 139647 0.71 0.507101
Target:  5'- gGCGCGGGGgUCGcggcGGGCGCGCcgccCGAc -3'
miRNA:   3'- aUGCGCCUCgAGUa---CCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 139203 0.66 0.793762
Target:  5'- gGCGCuGGAGCUCcUGGcgGCGaCGCUg-- -3'
miRNA:   3'- aUGCG-CCUCGAGuACC--UGC-GCGAgcu -5'
29529 5' -58.1 NC_006151.1 + 138724 0.66 0.811487
Target:  5'- cGCGCGcGGgUCGUGuACGCGCgccgCGAc -3'
miRNA:   3'- aUGCGCcUCgAGUACcUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 138144 0.79 0.188849
Target:  5'- gACGCGGAGgaCcgGcGCGCGCUCGAg -3'
miRNA:   3'- aUGCGCCUCgaGuaCcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 137317 0.75 0.305161
Target:  5'- cGCGCGGuGCUC---GACGCGCUCGc -3'
miRNA:   3'- aUGCGCCuCGAGuacCUGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 136638 0.68 0.707883
Target:  5'- -cCGCGGcGCcCGUGGG-GCGCUCGc -3'
miRNA:   3'- auGCGCCuCGaGUACCUgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 135121 0.69 0.616817
Target:  5'- cGCGCGGGGCgggC-UGGGCGgGgaCGGg -3'
miRNA:   3'- aUGCGCCUCGa--GuACCUGCgCgaGCU- -5'
29529 5' -58.1 NC_006151.1 + 131573 0.7 0.586379
Target:  5'- -cCGCGucGCUCAUGGugGuCGCUgCGGc -3'
miRNA:   3'- auGCGCcuCGAGUACCugC-GCGA-GCU- -5'
29529 5' -58.1 NC_006151.1 + 130309 0.75 0.326723
Target:  5'- gGCGCGGAGCgcgCGcgccGCGCGCUCGGg -3'
miRNA:   3'- aUGCGCCUCGa--GUacc-UGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 128828 0.73 0.423887
Target:  5'- gUACGCGGcGCUC-UGGGCcuuGUGCUUGAa -3'
miRNA:   3'- -AUGCGCCuCGAGuACCUG---CGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 128220 0.69 0.60665
Target:  5'- gGCGUGcgacGAGCUCGUGGGCGCcaggucGC-CGAu -3'
miRNA:   3'- aUGCGC----CUCGAGUACCUGCG------CGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 123269 0.69 0.626995
Target:  5'- cGCGCGcGGGCaccgUCGUGGACGaGCgCGAg -3'
miRNA:   3'- aUGCGC-CUCG----AGUACCUGCgCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 122687 0.73 0.406521
Target:  5'- cGCGCGGcGGC-CGUGGAgcuCGCGCUCu- -3'
miRNA:   3'- aUGCGCC-UCGaGUACCU---GCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 122513 0.8 0.154415
Target:  5'- cGCGCGGAcgcGCUCcUGGACGCGCaCGAc -3'
miRNA:   3'- aUGCGCCU---CGAGuACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 120798 0.75 0.329682
Target:  5'- gACGCGGAGCgCGccgcgcgcgaggugcUGGACGCGCcgcgCGAc -3'
miRNA:   3'- aUGCGCCUCGaGU---------------ACCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 120377 0.69 0.616817
Target:  5'- aGCGCccGGAcacgGC-CGUGGACGUGCUCa- -3'
miRNA:   3'- aUGCG--CCU----CGaGUACCUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 120214 0.69 0.647356
Target:  5'- aGCGCGGAGCcCccGG-CGCGCgaccaCGAc -3'
miRNA:   3'- aUGCGCCUCGaGuaCCuGCGCGa----GCU- -5'
29529 5' -58.1 NC_006151.1 + 119595 0.66 0.793762
Target:  5'- cGCGCcgacGGAGCccCAUGGGCGUcUUCGGg -3'
miRNA:   3'- aUGCG----CCUCGa-GUACCUGCGcGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 119435 0.7 0.566239
Target:  5'- gACGCGGGcacGUUCGUGGGC-CGCggCGAc -3'
miRNA:   3'- aUGCGCCU---CGAGUACCUGcGCGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.