miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 3' -52.1 NC_006151.1 + 88295 0.66 0.984381
Target:  5'- gGUGgua-GACGUgGGGgcGCAGGGCCu -3'
miRNA:   3'- aCACgaagCUGUAgCUCa-CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 62229 0.66 0.982428
Target:  5'- gGUGUUcgUCGAgGUCGucGUGUccGGCUa -3'
miRNA:   3'- aCACGA--AGCUgUAGCu-CACGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 61822 0.66 0.982428
Target:  5'- gGUGCUcuacgCGGCGUCGAcgGU--GGCCg -3'
miRNA:   3'- aCACGAa----GCUGUAGCUcaCGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 54516 0.66 0.982428
Target:  5'- uUGUGCg-CGGCAUCGcGGccUGCuucucGGCCa -3'
miRNA:   3'- -ACACGaaGCUGUAGC-UC--ACGuu---CCGG- -5'
29539 3' -52.1 NC_006151.1 + 101482 0.66 0.982222
Target:  5'- --cGCggCGACGUCGuGUacgucuucgacccGCAcGGCCa -3'
miRNA:   3'- acaCGaaGCUGUAGCuCA-------------CGUuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 100276 0.66 0.980295
Target:  5'- --cGCUUCGucuuCcgCGGGcGCAcGGCCu -3'
miRNA:   3'- acaCGAAGCu---GuaGCUCaCGUuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 111622 0.66 0.980295
Target:  5'- cUGUGCgUCGAggccaggaucaCGUUGuuGUGCucGGCCg -3'
miRNA:   3'- -ACACGaAGCU-----------GUAGCu-CACGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 125996 0.66 0.978926
Target:  5'- gGUGCUgcugcgCGGCAUCGccaacuucuucCAGGGCCu -3'
miRNA:   3'- aCACGAa-----GCUGUAGCucac-------GUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 70959 0.66 0.973854
Target:  5'- gGUGCgcgUGGcCGUCGAGgGCAAcagcagccaggacucGGCCg -3'
miRNA:   3'- aCACGaa-GCU-GUAGCUCaCGUU---------------CCGG- -5'
29539 3' -52.1 NC_006151.1 + 21531 0.66 0.972741
Target:  5'- --gGCUUCGGC--CGGG-GCcGGGGCCg -3'
miRNA:   3'- acaCGAAGCUGuaGCUCaCG-UUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 37548 0.66 0.972741
Target:  5'- cGUGCgccucaUCuACAgCGGGgccgccgGCGAGGCCa -3'
miRNA:   3'- aCACGa-----AGcUGUaGCUCa------CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 45285 0.66 0.972741
Target:  5'- gGUGag-CGGCGgucguccCGAGgacccGCGAGGCCg -3'
miRNA:   3'- aCACgaaGCUGUa------GCUCa----CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 104749 0.66 0.972741
Target:  5'- --cGCUUCGACuuugcgcgcuUCGAGcGCAcGGCg -3'
miRNA:   3'- acaCGAAGCUGu---------AGCUCaCGUuCCGg -5'
29539 3' -52.1 NC_006151.1 + 75386 0.66 0.971885
Target:  5'- aGUGCa-CGGCGcggggCGGGUGCGugcgcggguccgggAGGCCc -3'
miRNA:   3'- aCACGaaGCUGUa----GCUCACGU--------------UCCGG- -5'
29539 3' -52.1 NC_006151.1 + 44823 0.67 0.969811
Target:  5'- gGUGCgagGGCGUCGGGacCGGGGCg -3'
miRNA:   3'- aCACGaagCUGUAGCUCacGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 127988 0.67 0.966663
Target:  5'- cGUGCggCGGCuccgcGUCGcGGUcGCGGGGCg -3'
miRNA:   3'- aCACGaaGCUG-----UAGC-UCA-CGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 51165 0.67 0.959685
Target:  5'- --cGCggUGAUggUGAcGUGCAGGGCCc -3'
miRNA:   3'- acaCGaaGCUGuaGCU-CACGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 76014 0.67 0.959685
Target:  5'- --aGCUcCGACA-CGAGcGCGgcgcAGGCCa -3'
miRNA:   3'- acaCGAaGCUGUaGCUCaCGU----UCCGG- -5'
29539 3' -52.1 NC_006151.1 + 92771 0.67 0.959685
Target:  5'- cGUGCUgCGGCG-CGuccccaucGUGCAGGaGCCc -3'
miRNA:   3'- aCACGAaGCUGUaGCu-------CACGUUC-CGG- -5'
29539 3' -52.1 NC_006151.1 + 100447 0.67 0.959685
Target:  5'- aUG-GCgcagaCGACGgaggcgcugcgCGAGUGCGAGGCg -3'
miRNA:   3'- -ACaCGaa---GCUGUa----------GCUCACGUUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.