miRNA display CGI


Results 1 - 20 of 431 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 5' -61.8 NC_006151.1 + 142710 0.71 0.381703
Target:  5'- uGgGGCCagcucUCCCCcggGCCcccacaacucucugGCCGGGGGCCCa -3'
miRNA:   3'- -CgCCGGa----AGGGG---CGG--------------CGGCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 142285 0.67 0.590455
Target:  5'- gGCGGCCagaCCgGCCGggaCGAGAGCg- -3'
miRNA:   3'- -CGCCGGaagGGgCGGCg--GCUCUUGgg -5'
29539 5' -61.8 NC_006151.1 + 141797 0.69 0.514136
Target:  5'- cGCgGGUCggUCCCGCC-CCGAGGGCa- -3'
miRNA:   3'- -CG-CCGGaaGGGGCGGcGGCUCUUGgg -5'
29539 5' -61.8 NC_006151.1 + 141566 0.68 0.531953
Target:  5'- cCGGCgCgaUCCuCCGCCGCuccuccccccgggCGAGAGCCg -3'
miRNA:   3'- cGCCG-Ga-AGG-GGCGGCG-------------GCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 141462 0.7 0.433544
Target:  5'- gGCGGUCUggagCCgggggCGCCGaguCCGAGAGCCUc -3'
miRNA:   3'- -CGCCGGAa---GGg----GCGGC---GGCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 140380 0.67 0.629451
Target:  5'- cGCGGCUcgagcUgCgUGCUGcCCGAGGACCUg -3'
miRNA:   3'- -CGCCGGa----AgGgGCGGC-GGCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 139608 0.73 0.303614
Target:  5'- gGCGGCCcgUCCgggCGCgGCUGGGGGCCa -3'
miRNA:   3'- -CGCCGGa-AGGg--GCGgCGGCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 139455 0.66 0.697482
Target:  5'- -aGGCg--CCCCGCCGCCcgccACCUg -3'
miRNA:   3'- cgCCGgaaGGGGCGGCGGcucuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 138839 0.69 0.485611
Target:  5'- aGCGGCgcauguuuggcccCUUCCgCGaccCCGCCGAGuuccuGACCCc -3'
miRNA:   3'- -CGCCG-------------GAAGGgGC---GGCGGCUC-----UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 138604 0.71 0.408343
Target:  5'- cGCGGCgCUgccgCUCggcgaggaCGCCGCCGGGGGCgCg -3'
miRNA:   3'- -CGCCG-GAa---GGG--------GCGGCGGCUCUUGgG- -5'
29539 5' -61.8 NC_006151.1 + 138129 0.71 0.408343
Target:  5'- cGCGGCCUggCCgUGgaCGCgGAGGACCg -3'
miRNA:   3'- -CGCCGGAa-GGgGCg-GCGgCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 137448 0.67 0.609923
Target:  5'- cGCGGCCUcCUCCGacgaCGgccUCGAGGaggcGCCCu -3'
miRNA:   3'- -CGCCGGAaGGGGCg---GC---GGCUCU----UGGG- -5'
29539 5' -61.8 NC_006151.1 + 137416 0.72 0.317227
Target:  5'- gGC-GCCcUCgCCGCCGCCGcGGggUCCg -3'
miRNA:   3'- -CGcCGGaAGgGGCGGCGGC-UCuuGGG- -5'
29539 5' -61.8 NC_006151.1 + 137339 0.66 0.697482
Target:  5'- cGCuGCuCUUCCCCGagGCCGAcggcgacuGGGCCg -3'
miRNA:   3'- -CGcCG-GAAGGGGCggCGGCU--------CUUGGg -5'
29539 5' -61.8 NC_006151.1 + 137093 0.68 0.571098
Target:  5'- -aGGCCUUCgCggUGCUgGCCGGGGACgCCu -3'
miRNA:   3'- cgCCGGAAGgG--GCGG-CGGCUCUUG-GG- -5'
29539 5' -61.8 NC_006151.1 + 137043 0.66 0.67818
Target:  5'- cGCGuGCC--CCCCGgCGCCGGuGuACCg -3'
miRNA:   3'- -CGC-CGGaaGGGGCgGCGGCU-CuUGGg -5'
29539 5' -61.8 NC_006151.1 + 136845 0.73 0.299619
Target:  5'- cGCGGCCgccggCCucgcgcgccgcgugaCCGCCGUCGAGGagcgccucgcGCCCc -3'
miRNA:   3'- -CGCCGGaa---GG---------------GGCGGCGGCUCU----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 136815 0.66 0.687852
Target:  5'- cGCGGCCga-CgCGCCGCgCGGGcuCUg -3'
miRNA:   3'- -CGCCGGaagGgGCGGCG-GCUCuuGGg -5'
29539 5' -61.8 NC_006151.1 + 136755 0.66 0.69171
Target:  5'- cGCGcGCCUcgCCCCgGCCaugggcgccggcuacGUgGAGGACCg -3'
miRNA:   3'- -CGC-CGGAa-GGGG-CGG---------------CGgCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 135919 0.78 0.146866
Target:  5'- gGCGGUCgugcgcgcgCUCUGCCGCgGGGAGCCCc -3'
miRNA:   3'- -CGCCGGaa-------GGGGCGGCGgCUCUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.