miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 106200 0.73 0.386636
Target:  5'- aGCCGgcGGUGCGGCUCGCCcuccccgaccugAugGUgGCc -3'
miRNA:   3'- -CGGCa-CCGCGCCGAGCGG------------UugUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 64784 0.73 0.394946
Target:  5'- uGCCGgGGCGCGaGCUgGCCA-CGcccUCGCg -3'
miRNA:   3'- -CGGCaCCGCGC-CGAgCGGUuGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 105226 0.73 0.394946
Target:  5'- cGCUGcGGCaGCGGCUgacggcCGCCGAgGUCGCc -3'
miRNA:   3'- -CGGCaCCG-CGCCGA------GCGGUUgUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 139617 0.72 0.419687
Target:  5'- uCCG-GGCGCGGCUgggggccauccggCGCCGGCgcggggGUCGCg -3'
miRNA:   3'- cGGCaCCGCGCCGA-------------GCGGUUG------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 18676 0.72 0.420557
Target:  5'- gGCCGUacggguuccacgGGCGCgcgGGCggCGCCGGCGUCGu -3'
miRNA:   3'- -CGGCA------------CCGCG---CCGa-GCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 100062 0.72 0.420557
Target:  5'- gGUCGUGcGCGCGGC-CGCCGAgGUg-- -3'
miRNA:   3'- -CGGCAC-CGCGCCGaGCGGUUgUAgug -5'
29540 5' -58.5 NC_006151.1 + 54876 0.72 0.424046
Target:  5'- cGCUGUGGCGCGacGCgagcugcucuuugacUCGCCGGCGcagCGCg -3'
miRNA:   3'- -CGGCACCGCGC--CG---------------AGCGGUUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 96869 0.72 0.429314
Target:  5'- cGCCG-GGCGCGGCgcgCGCgGggGCAUgAUg -3'
miRNA:   3'- -CGGCaCCGCGCCGa--GCGgU--UGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 85173 0.72 0.429314
Target:  5'- cGCCGcgGGCGCcGC-CGCCccgcugGGCAUCGCg -3'
miRNA:   3'- -CGGCa-CCGCGcCGaGCGG------UUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 65818 0.72 0.429314
Target:  5'- cGCgGUGGauggGCGGCcgCGCCAGCGcggcccggcUCACg -3'
miRNA:   3'- -CGgCACCg---CGCCGa-GCGGUUGU---------AGUG- -5'
29540 5' -58.5 NC_006151.1 + 118126 0.72 0.429314
Target:  5'- uGCuCGUGGCGCGcagCGCCGACGaCGCc -3'
miRNA:   3'- -CG-GCACCGCGCcgaGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 100899 0.72 0.438177
Target:  5'- cGCCGcGGCGCGcGCgCGCCcGACGaCGCg -3'
miRNA:   3'- -CGGCaCCGCGC-CGaGCGG-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 72359 0.72 0.447145
Target:  5'- cGCCGcagGGCaGCGcgacCUCGCgCAGCGUCGCg -3'
miRNA:   3'- -CGGCa--CCG-CGCc---GAGCG-GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 21970 0.72 0.447145
Target:  5'- cGgCGUGGUGCGGC--GCCGGCAgCGCc -3'
miRNA:   3'- -CgGCACCGCGCCGagCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 107531 0.72 0.456214
Target:  5'- cGCCGuUGGCcccgGCGGCccCGCCGGCGcCGCc -3'
miRNA:   3'- -CGGC-ACCG----CGCCGa-GCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 117836 0.72 0.459869
Target:  5'- gGCCGgGGCGgGccggacucuaccaccGC-CGCCGACGUCGCg -3'
miRNA:   3'- -CGGCaCCGCgC---------------CGaGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 70639 0.72 0.46538
Target:  5'- cGCCGUGGcCGCGcGCgaggCGCCcguCcUCACg -3'
miRNA:   3'- -CGGCACC-GCGC-CGa---GCGGuu-GuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 130285 0.72 0.46538
Target:  5'- gGCCGcgGGCGCGcGC-CgGCCGACggCGCg -3'
miRNA:   3'- -CGGCa-CCGCGC-CGaG-CGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 54415 0.72 0.46538
Target:  5'- cGCCGaggcgcUGGCGCGGCgcuUCGgCGACGagGCg -3'
miRNA:   3'- -CGGC------ACCGCGCCG---AGCgGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 136826 0.72 0.46538
Target:  5'- cGCCGcgcgGGCucugcgacGCGGC-CGCCGGCcUCGCg -3'
miRNA:   3'- -CGGCa---CCG--------CGCCGaGCGGUUGuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.