miRNA display CGI


Results 21 - 40 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 133755 0.76 0.356254
Target:  5'- gGGCGCGUGCGGaucgaucuuuAUACGCGCC-GCCc -3'
miRNA:   3'- -CUGCGCAUGUCgu--------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 68258 0.76 0.356254
Target:  5'- aGACGCGcGCGGCGACggucGCgGCGCCgggcGCCa -3'
miRNA:   3'- -CUGCGCaUGUCGUUG----UG-CGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 57101 0.76 0.356254
Target:  5'- aGCGCc-GCgAGCAGCGCGCGCC-GCCg -3'
miRNA:   3'- cUGCGcaUG-UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118354 0.76 0.356254
Target:  5'- cGCGCGccUGCgaGGCGGCGCGCGCCcGCUu -3'
miRNA:   3'- cUGCGC--AUG--UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 81610 0.76 0.369917
Target:  5'- cGGCGCGcaGCAGCAGgGCgacggcgaagaagaGCGCCUGCUg -3'
miRNA:   3'- -CUGCGCa-UGUCGUUgUG--------------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 125556 0.76 0.372365
Target:  5'- cGGCGUGUACGuGCAGaacucCAUGCGCgUGCCc -3'
miRNA:   3'- -CUGCGCAUGU-CGUU-----GUGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 106348 0.76 0.372365
Target:  5'- gGACGCGguggACAcGCuggacgcgGGCGCGCGCCcGCCg -3'
miRNA:   3'- -CUGCGCa---UGU-CG--------UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 103677 0.76 0.380605
Target:  5'- cGGCGCGcGCGGCGgggguGCuGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUGUCGU-----UG-UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 113070 0.76 0.380605
Target:  5'- cGACGCGUACG--AGCGCGCGgCCgucGCCg -3'
miRNA:   3'- -CUGCGCAUGUcgUUGUGCGC-GGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 58315 0.76 0.380605
Target:  5'- --gGCGUuuCAGCGGCgGCGCGCCgGCCu -3'
miRNA:   3'- cugCGCAu-GUCGUUG-UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 68606 0.76 0.380605
Target:  5'- cGACGCGccucggaAGCGACACGCGaaCUGCCc -3'
miRNA:   3'- -CUGCGCaug----UCGUUGUGCGCg-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 54426 0.76 0.380605
Target:  5'- uGGCGCGgcgcuuCGGCGACGagGCGCCcGCCg -3'
miRNA:   3'- -CUGCGCau----GUCGUUGUg-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64438 0.75 0.392342
Target:  5'- cGCGCGUggccGCcuccaccgucaggauGGCGGCGCGCGCC-GCCg -3'
miRNA:   3'- cUGCGCA----UG---------------UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 84772 0.75 0.397444
Target:  5'- gGAgGCGgAC-GCGGCGCGCGCC-GCCg -3'
miRNA:   3'- -CUgCGCaUGuCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 119104 0.75 0.406042
Target:  5'- cGGCGCGUACgugAGCcGCGCG-GCCgGCCu -3'
miRNA:   3'- -CUGCGCAUG---UCGuUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 84133 0.75 0.406042
Target:  5'- aGCGCGgGCAGCGGCACGagggGCUgUGCCa -3'
miRNA:   3'- cUGCGCaUGUCGUUGUGCg---CGG-ACGG- -5'
29543 3' -56.1 NC_006151.1 + 91564 0.75 0.406042
Target:  5'- cGGgGCG-AUGGCGGCGCGCGCgUGCUc -3'
miRNA:   3'- -CUgCGCaUGUCGUUGUGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 135485 0.75 0.414755
Target:  5'- cGCGCGgGCcaGGCGGCGCGCGgCCUcgGCCg -3'
miRNA:   3'- cUGCGCaUG--UCGUUGUGCGC-GGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 92176 0.75 0.414755
Target:  5'- uGCGCGccgACGGCGACggggccgccgACGCGCC-GCCg -3'
miRNA:   3'- cUGCGCa--UGUCGUUG----------UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 130465 0.75 0.414755
Target:  5'- --gGCGUGguGCAGgGCGaugGCCUGCCg -3'
miRNA:   3'- cugCGCAUguCGUUgUGCg--CGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.