miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 142916 0.67 0.839477
Target:  5'- cGGCGCGgGCAccGaCAccguccccaccacACGCGCGCCcGCCc -3'
miRNA:   3'- -CUGCGCaUGU--C-GU-------------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 141848 0.7 0.700541
Target:  5'- cGACGCGaGgGGCucGCGcCGCGCCcucuggUGCCg -3'
miRNA:   3'- -CUGCGCaUgUCGu-UGU-GCGCGG------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 140472 0.67 0.840297
Target:  5'- gGACGCGcuggacucccACAaaaccggcuGCGACGCGCccaCCUGCCg -3'
miRNA:   3'- -CUGCGCa---------UGU---------CGUUGUGCGc--GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 140286 0.68 0.806066
Target:  5'- cGACGagcuCGUGCGcCGGCGC-CGCCUGCg -3'
miRNA:   3'- -CUGC----GCAUGUcGUUGUGcGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 139776 0.66 0.899193
Target:  5'- cGACGCGccccccgAUcgucugucggagAGC-GCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCa------UG------------UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 139646 0.72 0.567495
Target:  5'- cGGCGCGggggucGCGGCGG-GCGCGCC-GCCc -3'
miRNA:   3'- -CUGCGCa-----UGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 139308 0.73 0.517491
Target:  5'- cGGCGCGUGCuGCucGAC-CGUGCUcGCCg -3'
miRNA:   3'- -CUGCGCAUGuCG--UUGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 139269 0.71 0.639212
Target:  5'- cGCGCGcuccgACGGCGG-ACGCGCC-GCCc -3'
miRNA:   3'- cUGCGCa----UGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 139223 0.68 0.814884
Target:  5'- cGACGC-UGCcGCAcaucGCGCGCGUCU-CCg -3'
miRNA:   3'- -CUGCGcAUGuCGU----UGUGCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 138739 0.68 0.769291
Target:  5'- uACGCGcGCcGCGACugcCGCGCCUaCCu -3'
miRNA:   3'- cUGCGCaUGuCGUUGu--GCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 138556 0.79 0.257492
Target:  5'- gGGCGCGUACuacGCGACcguCGCccGCCUGCCc -3'
miRNA:   3'- -CUGCGCAUGu--CGUUGu--GCG--CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 138330 0.67 0.848396
Target:  5'- -cUGCGggccCGGCAcGCGCGCaGCCcGCCg -3'
miRNA:   3'- cuGCGCau--GUCGU-UGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 138143 0.69 0.73054
Target:  5'- gGACGCGga-GGacCGGCGCGCGCUcgagGCCu -3'
miRNA:   3'- -CUGCGCaugUC--GUUGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 137912 0.72 0.577658
Target:  5'- cGACgGCG-GCGGCugccACGgGCGCCUGCUc -3'
miRNA:   3'- -CUG-CGCaUGUCGu---UGUgCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 137861 0.73 0.507693
Target:  5'- gGGCGUGUACGcGCAcGgGCGCaGCCUGCg -3'
miRNA:   3'- -CUGCGCAUGU-CGU-UgUGCG-CGGACGg -5'
29543 3' -56.1 NC_006151.1 + 137613 0.68 0.806066
Target:  5'- gGGCGCGgGCGGgGACcccgGCGCCUccGCCc -3'
miRNA:   3'- -CUGCGCaUGUCgUUGug--CGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 137386 0.67 0.848396
Target:  5'- uACGUGUACA--AGa--GCGCCUGCCc -3'
miRNA:   3'- cUGCGCAUGUcgUUgugCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 137135 0.73 0.527365
Target:  5'- cGGCGCG-GC-GCGACGCgGCGCCggagaugGCCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUGUG-CGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 137067 0.69 0.73054
Target:  5'- -cCGCGUGgAGCuggcGCACcgGCGCCagGCCu -3'
miRNA:   3'- cuGCGCAUgUCGu---UGUG--CGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 137004 0.73 0.537307
Target:  5'- cGCGCGcACGGCGcuGgGCGCccugcucgGCCUGCCg -3'
miRNA:   3'- cUGCGCaUGUCGU--UgUGCG--------CGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.