miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 141684 0.66 0.936438
Target:  5'- aUGUCUGCCucccACGgcGGCUGGCgGcgGaCGCg -3'
miRNA:   3'- gGCAGAUGG----UGU--UCGACCGgUa-C-GCG- -5'
29543 5' -54.5 NC_006151.1 + 141635 0.66 0.950144
Target:  5'- gUCG-CUGCCGCGgcGGCgcggcggGGCCccGCGg -3'
miRNA:   3'- -GGCaGAUGGUGU--UCGa------CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 141411 0.66 0.945816
Target:  5'- uCCGgcgAUCgguGCGGGCgcGGCCcgGCGCg -3'
miRNA:   3'- -GGCagaUGG---UGUUCGa-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 139916 0.67 0.914755
Target:  5'- uCCG-C-GCCGCGGGCUcgucGCCGUGgGCc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGAc---CGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 139816 0.7 0.791799
Target:  5'- gCCGUCU-CCGCGAcgcacGCgcgGGUCG-GCGCg -3'
miRNA:   3'- -GGCAGAuGGUGUU-----CGa--CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 139613 0.66 0.945816
Target:  5'- cCCGUCcgGgCGC-GGCUgggGGCCAUccgGCGCc -3'
miRNA:   3'- -GGCAGa-UgGUGuUCGA---CCGGUA---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 137726 0.66 0.931384
Target:  5'- gCCGUC-GCCguACGcGgUGGCCG-GCGCc -3'
miRNA:   3'- -GGCAGaUGG--UGUuCgACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 137656 0.66 0.926086
Target:  5'- cCCGUCccgGCgGaCGAGCgcccGCCGUGCGg -3'
miRNA:   3'- -GGCAGa--UGgU-GUUCGac--CGGUACGCg -5'
29543 5' -54.5 NC_006151.1 + 137271 0.73 0.632168
Target:  5'- cCCGgugcCCGCGGGCacgcucgaggcGGCCAUGCGCg -3'
miRNA:   3'- -GGCagauGGUGUUCGa----------CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 137058 0.72 0.652871
Target:  5'- gCCgGUgUACCGCGuggAGCUGGCgCAccgGCGCc -3'
miRNA:   3'- -GG-CAgAUGGUGU---UCGACCG-GUa--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 136954 0.77 0.398821
Target:  5'- gCCGUCcugcGCCGCcugcugGAGCUGGCCGccGCGCc -3'
miRNA:   3'- -GGCAGa---UGGUG------UUCGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 135899 0.75 0.510021
Target:  5'- uUCGUCgccGCCGCGaccccGGC-GGUCGUGCGCg -3'
miRNA:   3'- -GGCAGa--UGGUGU-----UCGaCCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 135851 0.67 0.895942
Target:  5'- aCGuUCUGCCucacCGGGCacgUGGCCA-GCGUc -3'
miRNA:   3'- gGC-AGAUGGu---GUUCG---ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 135354 0.71 0.72433
Target:  5'- uCCGcgagCcGCCGCGcGUUGGCCGcgUGCGCc -3'
miRNA:   3'- -GGCa---GaUGGUGUuCGACCGGU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 135231 0.71 0.704178
Target:  5'- aCGUCggacaucACCACGuugcucucGGC-GGUCAUGCGCa -3'
miRNA:   3'- gGCAGa------UGGUGU--------UCGaCCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 135183 0.66 0.945816
Target:  5'- gCCGgCUGCCGCc-GCcgGGCCAgucccaGCGUc -3'
miRNA:   3'- -GGCaGAUGGUGuuCGa-CCGGUa-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 134600 0.67 0.920543
Target:  5'- cCCGgugacCCugGAGUcgGGCCA-GCGCg -3'
miRNA:   3'- -GGCagau-GGugUUCGa-CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 132843 0.66 0.926086
Target:  5'- aCGgCcACCACGGGCggccGGCCcgGgGCc -3'
miRNA:   3'- gGCaGaUGGUGUUCGa---CCGGuaCgCG- -5'
29543 5' -54.5 NC_006151.1 + 132337 0.68 0.87792
Target:  5'- gCCGUg-GCCACGuacaggugcaggaagAGCcagggGGCCAgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUGU---------------UCGa----CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 131932 0.7 0.773119
Target:  5'- gCGgugCUGCCgu-AGCUGGCCAcGgGCg -3'
miRNA:   3'- gGCa--GAUGGuguUCGACCGGUaCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.