miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 142985 0.73 0.334084
Target:  5'- uGCCGCGGgugGGCCCgacCGcAGCAuCGcGGCUCg -3'
miRNA:   3'- -CGGUGCU---UCGGGa--GC-UCGU-GC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 142876 0.67 0.686704
Target:  5'- gGCCcccagcgcacccaagGCGAA-CCCUCGcgggcgccaccGGCGCGGGCa- -3'
miRNA:   3'- -CGG---------------UGCUUcGGGAGC-----------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 142141 0.67 0.702534
Target:  5'- cGCC-CGAuGCCUgCGccGGCGCaggGGGCUCg -3'
miRNA:   3'- -CGGuGCUuCGGGaGC--UCGUG---CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 141651 0.71 0.448982
Target:  5'- cGCgGCGggGCCC-----CGCGGGCUCg -3'
miRNA:   3'- -CGgUGCuuCGGGagcucGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 141268 0.67 0.672761
Target:  5'- aGUCGCGggGCCUcggCGGcuGCGguccgaugacggUGGGCUCg -3'
miRNA:   3'- -CGGUGCuuCGGGa--GCU--CGU------------GCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 141132 0.68 0.642699
Target:  5'- aGCCccccccagAgGAAGCCCaCGAGCAccauCGGGCg- -3'
miRNA:   3'- -CGG--------UgCUUCGGGaGCUCGU----GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 140364 0.66 0.722111
Target:  5'- cGCC-CGc-GUCgUCGAGCGC-GGCUCg -3'
miRNA:   3'- -CGGuGCuuCGGgAGCUCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 139563 0.72 0.372551
Target:  5'- --aGCGgcGCCCgguccgCGAGCGCcuGGGCUCg -3'
miRNA:   3'- cggUGCuuCGGGa-----GCUCGUG--CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 139048 0.7 0.494061
Target:  5'- cCCACGcuGaucgcgcucauccUCCUCGAGCuCGGGCUCc -3'
miRNA:   3'- cGGUGCuuC-------------GGGAGCUCGuGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 137269 0.66 0.731792
Target:  5'- cGCC-CGguGCCCgCGGGCACGcucgaGGCg- -3'
miRNA:   3'- -CGGuGCuuCGGGaGCUCGUGC-----CCGag -5'
29544 3' -59.6 NC_006151.1 + 137118 0.67 0.692655
Target:  5'- cGCCugGggGCgCgCGAcgGCGCGGcGCg- -3'
miRNA:   3'- -CGGugCuuCGgGaGCU--CGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 136806 0.73 0.334084
Target:  5'- cGCCGCGcucgcGGCCgaCGcgccGCGCGGGCUCu -3'
miRNA:   3'- -CGGUGCu----UCGGgaGCu---CGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 136361 0.7 0.495003
Target:  5'- cCCGCGggGCUgcuCUCGuuCGCGGcGCUCu -3'
miRNA:   3'- cGGUGCuuCGG---GAGCucGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 135938 0.77 0.204759
Target:  5'- uGCCGCGggGagcCCCUCGcGGCGCGGGacgucCUCg -3'
miRNA:   3'- -CGGUGCuuC---GGGAGC-UCGUGCCC-----GAG- -5'
29544 3' -59.6 NC_006151.1 + 135718 0.69 0.543051
Target:  5'- uGCuCACGGgcaggAGCCCUCGGGgGCGGuCUa -3'
miRNA:   3'- -CG-GUGCU-----UCGGGAGCUCgUGCCcGAg -5'
29544 3' -59.6 NC_006151.1 + 135156 0.67 0.652738
Target:  5'- aGCCcgGCGGgcgcGGCCCggaCGGGCGCcGGCUg -3'
miRNA:   3'- -CGG--UGCU----UCGGGa--GCUCGUGcCCGAg -5'
29544 3' -59.6 NC_006151.1 + 135035 0.66 0.750896
Target:  5'- gGCCGCGucGUCCUCGGG-GCGGuccccCUCc -3'
miRNA:   3'- -CGGUGCuuCGGGAGCUCgUGCCc----GAG- -5'
29544 3' -59.6 NC_006151.1 + 134761 0.68 0.642699
Target:  5'- cGCgCGCGggGCCCgcggcuUCGGcucCACGGGCc- -3'
miRNA:   3'- -CG-GUGCuuCGGG------AGCUc--GUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 134721 0.66 0.731792
Target:  5'- cCCGCGuGGCCUUC--GCGCGGGaCUUu -3'
miRNA:   3'- cGGUGCuUCGGGAGcuCGUGCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 134317 0.66 0.731792
Target:  5'- cGCCGCu--GCgCCUCGcGC-CGGGCaUCg -3'
miRNA:   3'- -CGGUGcuuCG-GGAGCuCGuGCCCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.