miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 3' -62.9 NC_006151.1 + 111736 0.68 0.461447
Target:  5'- aCGCgCACguaGGGGUCGCaGGGGAcGUGg- -3'
miRNA:   3'- -GCG-GUGa--CCCCGGCG-CCCCUcUACag -5'
29548 3' -62.9 NC_006151.1 + 71633 0.68 0.461447
Target:  5'- uCGCCGggGGGGaCgGuCGGGGGGccGUCg -3'
miRNA:   3'- -GCGGUgaCCCC-GgC-GCCCCUCuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 40519 0.68 0.469499
Target:  5'- gGCCGgaGGuGGCUGCGGcggcggcGGAGGUGg- -3'
miRNA:   3'- gCGGUgaCC-CCGGCGCC-------CCUCUACag -5'
29548 3' -62.9 NC_006151.1 + 21429 0.68 0.470398
Target:  5'- gGCCucgGGGGUCGCGGcGuGGGGUGg- -3'
miRNA:   3'- gCGGugaCCCCGGCGCC-C-CUCUACag -5'
29548 3' -62.9 NC_006151.1 + 5313 0.68 0.474003
Target:  5'- uGCUGCUGGagcugcugaagccgcGGCCGCGGcGGAGGg--- -3'
miRNA:   3'- gCGGUGACC---------------CCGGCGCC-CCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 52385 0.68 0.478529
Target:  5'- gGcCCGCgGGGGCgGCGGGcgccgccgcgcccGAGAaGUCa -3'
miRNA:   3'- gC-GGUGaCCCCGgCGCCC-------------CUCUaCAG- -5'
29548 3' -62.9 NC_006151.1 + 121390 0.68 0.478529
Target:  5'- cCGCCuucgacuUUGGGGCCuGCGGcgcgggcGGGGAcGUCg -3'
miRNA:   3'- -GCGGu------GACCCCGG-CGCC-------CCUCUaCAG- -5'
29548 3' -62.9 NC_006151.1 + 40565 0.68 0.488559
Target:  5'- aGCgGCggcGGcGGCCGCGGcGGAGGgcUCg -3'
miRNA:   3'- gCGgUGa--CC-CCGGCGCC-CCUCUacAG- -5'
29548 3' -62.9 NC_006151.1 + 5429 0.67 0.497763
Target:  5'- uCGUCcuuCUcGGGGCCGCGGGcGAcg-GUCu -3'
miRNA:   3'- -GCGGu--GA-CCCCGGCGCCC-CUcuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 18042 0.67 0.497763
Target:  5'- uCGUC-CUGGGGgCgcaGCGGGGAGcgggGUCc -3'
miRNA:   3'- -GCGGuGACCCCgG---CGCCCCUCua--CAG- -5'
29548 3' -62.9 NC_006151.1 + 21574 0.67 0.507043
Target:  5'- cCGCCGa--GGGCCGCGcGGGGucGAUGg- -3'
miRNA:   3'- -GCGGUgacCCCGGCGC-CCCU--CUACag -5'
29548 3' -62.9 NC_006151.1 + 97361 0.67 0.516396
Target:  5'- gGCCGCggcggcGGcGGgCGCGGcGGGGgcGUCg -3'
miRNA:   3'- gCGGUGa-----CC-CCgGCGCC-CCUCuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 89553 0.67 0.525818
Target:  5'- gGCCGgUGGaGGCCGCGaGGcuGAUGg- -3'
miRNA:   3'- gCGGUgACC-CCGGCGC-CCcuCUACag -5'
29548 3' -62.9 NC_006151.1 + 84820 0.67 0.525818
Target:  5'- gGCCGCggacGGGGCCGCGaGGuGcAGAUcGcCa -3'
miRNA:   3'- gCGGUGa---CCCCGGCGC-CC-C-UCUA-CaG- -5'
29548 3' -62.9 NC_006151.1 + 5038 0.67 0.525818
Target:  5'- gGCCGg-GGaGGCCGCGGcGGAGGa--- -3'
miRNA:   3'- gCGGUgaCC-CCGGCGCC-CCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 129528 0.67 0.535304
Target:  5'- cCGCCgACgggGGGGCC-CGGGGccGccGUCa -3'
miRNA:   3'- -GCGG-UGa--CCCCGGcGCCCCu-CuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 713 0.67 0.535304
Target:  5'- cCGUCGCaccgGGGGuCCGCGGGcGGGGg--- -3'
miRNA:   3'- -GCGGUGa---CCCC-GGCGCCC-CUCUacag -5'
29548 3' -62.9 NC_006151.1 + 113675 0.67 0.536256
Target:  5'- uCGCCGCcgagaaccgcuucgaGGGGCgcgugUGCGGGGAGcUGUg -3'
miRNA:   3'- -GCGGUGa--------------CCCCG-----GCGCCCCUCuACAg -5'
29548 3' -62.9 NC_006151.1 + 28372 0.67 0.544849
Target:  5'- uCGCCAaugGGGGCaCGUGGGGcccGUGg- -3'
miRNA:   3'- -GCGGUga-CCCCG-GCGCCCCuc-UACag -5'
29548 3' -62.9 NC_006151.1 + 90280 0.66 0.553487
Target:  5'- gCGCCgacgaGCUGGaGGCCcaugcacGCGGGGAuGAaccgGUCc -3'
miRNA:   3'- -GCGG-----UGACC-CCGG-------CGCCCCU-CUa---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.