Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29548 | 5' | -56.5 | NC_006151.1 | + | 95792 | 0.66 | 0.87033 |
Target: 5'- aUGuUCagCACGGCgCGaCGUCCGCGuGCc -3' miRNA: 3'- -ACuAGagGUGCCGaGC-GUAGGCGU-CG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 4786 | 0.66 | 0.884662 |
Target: 5'- cGggCccggCCGCGGCgcgguaGCGggCCGCGGCc -3' miRNA: 3'- aCuaGa---GGUGCCGag----CGUa-GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 723 | 0.66 | 0.877606 |
Target: 5'- gGGggUCCGCgGGCgggggcuucCGC-UCCGCGGCg -3' miRNA: 3'- aCUagAGGUG-CCGa--------GCGuAGGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 91101 | 0.66 | 0.877606 |
Target: 5'- aGGUCgucccggCCGCGGCgcccuUCGCcaCgGCGGCg -3' miRNA: 3'- aCUAGa------GGUGCCG-----AGCGuaGgCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 81010 | 0.66 | 0.877606 |
Target: 5'- cGGUCUCCA-GGaUCGUGcCCGCGGa -3' miRNA: 3'- aCUAGAGGUgCCgAGCGUaGGCGUCg -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 69036 | 0.66 | 0.877606 |
Target: 5'- ---gCUCCGCGGUg-GCGUCaaagaccgGCAGCg -3' miRNA: 3'- acuaGAGGUGCCGagCGUAGg-------CGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 141836 | 0.66 | 0.876888 |
Target: 5'- gGGUC-CCGCgcucgacgcgaggGGCUCGCG-CCGC-GCc -3' miRNA: 3'- aCUAGaGGUG-------------CCGAGCGUaGGCGuCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 132303 | 0.66 | 0.876168 |
Target: 5'- cUGGUCcgcgugcaggcgCCACGagaGCUCGCGcgCCGUGGCc -3' miRNA: 3'- -ACUAGa-----------GGUGC---CGAGCGUa-GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 134498 | 0.66 | 0.87033 |
Target: 5'- -cGUCUUCGgGcGCUCGUcccucaaccUCCGCGGCa -3' miRNA: 3'- acUAGAGGUgC-CGAGCGu--------AGGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 68152 | 0.66 | 0.884662 |
Target: 5'- gUGGUCguggUCACGGCcgccaccagCGCGUagGCGGCg -3' miRNA: 3'- -ACUAGa---GGUGCCGa--------GCGUAggCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 117658 | 0.66 | 0.884662 |
Target: 5'- ---gCUCCGgGGCguccagGCA-CCGCGGCg -3' miRNA: 3'- acuaGAGGUgCCGag----CGUaGGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 131111 | 0.66 | 0.884662 |
Target: 5'- gGggCccggCCGCGGCgcgggaggcCGCGgcgCCGCGGCc -3' miRNA: 3'- aCuaGa---GGUGCCGa--------GCGUa--GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 74639 | 0.66 | 0.891493 |
Target: 5'- aGGUCcuuguaCACGGCggCGCAgUCCucggGCAGCu -3' miRNA: 3'- aCUAGag----GUGCCGa-GCGU-AGG----CGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 67781 | 0.66 | 0.891493 |
Target: 5'- uUGAgggCgUCCACGuGCUCcacgcgGCAcUCGCGGCa -3' miRNA: 3'- -ACUa--G-AGGUGC-CGAG------CGUaGGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 5022 | 0.66 | 0.891493 |
Target: 5'- cGggCUCCGgGGC-CGgGgccggggaggCCGCGGCg -3' miRNA: 3'- aCuaGAGGUgCCGaGCgUa---------GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 99031 | 0.66 | 0.889467 |
Target: 5'- -cGUCUCCGCGGCccucgCGCAcggggacgcguacgUgCGCgAGCu -3' miRNA: 3'- acUAGAGGUGCCGa----GCGU--------------AgGCG-UCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 59939 | 0.66 | 0.885355 |
Target: 5'- -cGUCagCgGCGGCUCGCAgcccucgagcgccacCCGCAGg -3' miRNA: 3'- acUAGa-GgUGCCGAGCGUa--------------GGCGUCg -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 113262 | 0.66 | 0.884662 |
Target: 5'- cGAgggCUUCcUGGCcCGCAacaccgCCGCGGCg -3' miRNA: 3'- aCUa--GAGGuGCCGaGCGUa-----GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 94026 | 0.66 | 0.884662 |
Target: 5'- -----gCCGCGcgcacguagcGCUCGCGcgCCGCGGCg -3' miRNA: 3'- acuagaGGUGC----------CGAGCGUa-GGCGUCG- -5' |
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29548 | 5' | -56.5 | NC_006151.1 | + | 104834 | 0.66 | 0.884662 |
Target: 5'- cGGccUCgCCGCGGCggagGCGgaccaggCCGCGGCg -3' miRNA: 3'- aCU--AGaGGUGCCGag--CGUa------GGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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