miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 141694 0.67 0.55594
Target:  5'- cCCaCGGcGGCUGGcGGcGgaCGCGgUGCc -3'
miRNA:   3'- -GG-GCC-CCGACCaCCaCgaGCGCgACG- -5'
29551 5' -62.6 NC_006151.1 + 135097 0.66 0.59464
Target:  5'- -gCGGGGCcGGgcgGGcgGCgguagCGCGCgggGCg -3'
miRNA:   3'- ggGCCCCGaCCa--CCa-CGa----GCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 133638 0.77 0.134058
Target:  5'- gCCGGGGCggUGGUccgGGUGCgagagGCGCUGCc -3'
miRNA:   3'- gGGCCCCG--ACCA---CCACGag---CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 129542 0.67 0.579091
Target:  5'- gCCCGGGGCcGccgucaaccgcagcUGGcGCaugacggcgUCGCGCUGCu -3'
miRNA:   3'- -GGGCCCCGaCc-------------ACCaCG---------AGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 122175 0.66 0.623949
Target:  5'- gCgGcGGGCUcGUGGUGC-CGCcggaGCUGUa -3'
miRNA:   3'- gGgC-CCCGAcCACCACGaGCG----CGACG- -5'
29551 5' -62.6 NC_006151.1 + 121726 0.66 0.598539
Target:  5'- uCCUGGGGCaGGUGcagacguacGUGUUuCacuggagaugcugaaGCGCUGCg -3'
miRNA:   3'- -GGGCCCCGaCCAC---------CACGA-G---------------CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 121429 0.66 0.584913
Target:  5'- uCgCGGGGCUcgcgccGGccucgcUGGUGCcCGCGgaGCu -3'
miRNA:   3'- -GgGCCCCGA------CC------ACCACGaGCGCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 115564 0.66 0.633739
Target:  5'- gCCCGcGGGCgggcgcgcGGgcaGGUcgcgcucgagcaGCUCGCGCgugGCc -3'
miRNA:   3'- -GGGC-CCCGa-------CCa--CCA------------CGAGCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 113325 0.67 0.546371
Target:  5'- gCUGGGGCccgUGcUGGcGCUgGCGCUGa -3'
miRNA:   3'- gGGCCCCG---ACcACCaCGAgCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 112073 0.7 0.379198
Target:  5'- -gUGGGGCUGGUGGaGCuccccgggUCGgGCgGCg -3'
miRNA:   3'- ggGCCCCGACCACCaCG--------AGCgCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 105360 0.68 0.47212
Target:  5'- -aCGGcGaccaUGGaGGUGCUgGCGCUGCg -3'
miRNA:   3'- ggGCCcCg---ACCaCCACGAgCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 103898 0.68 0.481138
Target:  5'- aCCUGGcGCUGGaGGUgGCgCGCGCgGCc -3'
miRNA:   3'- -GGGCCcCGACCaCCA-CGaGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 103716 0.67 0.527398
Target:  5'- aCCCGGaGCUGGgcuuccUGGagccGCUgGCGCgGCa -3'
miRNA:   3'- -GGGCCcCGACC------ACCa---CGAgCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 103534 0.71 0.323973
Target:  5'- cCCCGGcGcGCUGGUGGgcgccgggcagccGCUCgggGCGCUGg -3'
miRNA:   3'- -GGGCC-C-CGACCACCa------------CGAG---CGCGACg -5'
29551 5' -62.6 NC_006151.1 + 103462 0.66 0.584913
Target:  5'- gCCCGugccGGGCac--GGUGCUCgcgGCGCUGUg -3'
miRNA:   3'- -GGGC----CCCGaccaCCACGAG---CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 103033 0.7 0.371377
Target:  5'- cCUCGGGGcCUGGU-----UCGCGCUGCu -3'
miRNA:   3'- -GGGCCCC-GACCAccacgAGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 102521 0.7 0.390333
Target:  5'- cCCCGGcGGCgucuacgaccagacGGUGGUgGCgcgCGCGCggGCc -3'
miRNA:   3'- -GGGCC-CCGa-------------CCACCA-CGa--GCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 102297 0.71 0.34858
Target:  5'- gCCGGGGacuuugUGGccgccacgcacaUGGUGCUgacggaggcgcgCGCGCUGCu -3'
miRNA:   3'- gGGCCCCg-----ACC------------ACCACGA------------GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 102036 0.71 0.356067
Target:  5'- gUCCGGGaGCUGGagcUGGccccGCUCGaccugggccCGCUGCa -3'
miRNA:   3'- -GGGCCC-CGACC---ACCa---CGAGC---------GCGACG- -5'
29551 5' -62.6 NC_006151.1 + 101285 0.69 0.463188
Target:  5'- -aCGaGGGCgcgGGcGGcGC-CGCGCUGCa -3'
miRNA:   3'- ggGC-CCCGa--CCaCCaCGaGCGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.