miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 5' -59.3 NC_006151.1 + 121180 0.79 0.123754
Target:  5'- -aCGCGGCCGUGCUGCacGCGCUcgGGg -3'
miRNA:   3'- aaGCGCUGGCACGACG--CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 113030 0.66 0.677541
Target:  5'- -aCGCGugCGccgggUGCUGCGCGgCGgcgGAg -3'
miRNA:   3'- aaGCGCugGC-----ACGACGCGCgGUa--CUa -5'
29553 5' -59.3 NC_006151.1 + 73396 0.66 0.677541
Target:  5'- -gCGCGGCCGccGCguacGCG-GCCGUGAa -3'
miRNA:   3'- aaGCGCUGGCa-CGa---CGCgCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 57313 0.66 0.677541
Target:  5'- -gCGCGGCCGaagccGCUGCGCGaCggGAa -3'
miRNA:   3'- aaGCGCUGGCa----CGACGCGCgGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 103225 0.66 0.674486
Target:  5'- -gCGCGugCGcgcgauggaggaccUGCUGCggcacauccGCGCCAUGGg -3'
miRNA:   3'- aaGCGCugGC--------------ACGACG---------CGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 120565 0.67 0.667344
Target:  5'- aUCGCGGCCGUGaaGCGCuucuCgGUGGa -3'
miRNA:   3'- aAGCGCUGGCACgaCGCGc---GgUACUa -5'
29553 5' -59.3 NC_006151.1 + 84624 0.67 0.667344
Target:  5'- -gCGCGGCCGccGCgGCGCuggacaacGCCAUGGc -3'
miRNA:   3'- aaGCGCUGGCa-CGaCGCG--------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 118210 0.67 0.657117
Target:  5'- -aCGUGGCCGUGgUGgcggGCGCCcgGAc -3'
miRNA:   3'- aaGCGCUGGCACgACg---CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 71219 0.67 0.646871
Target:  5'- -cCGUGACCGUGggcgcGCGCGCCGa--- -3'
miRNA:   3'- aaGCGCUGGCACga---CGCGCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 49616 0.66 0.687701
Target:  5'- gUCcUGGCgGUGCUGCGCgaguggggguggGCCGUGGa -3'
miRNA:   3'- aAGcGCUGgCACGACGCG------------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 103745 0.66 0.687701
Target:  5'- -gCGCGGCaGUGCgaggaGCGCGCCGcGGc -3'
miRNA:   3'- aaGCGCUGgCACGa----CGCGCGGUaCUa -5'
29553 5' -59.3 NC_006151.1 + 132170 0.66 0.687701
Target:  5'- -gCGCGGCCG-GCaccgGCGCGCCc---- -3'
miRNA:   3'- aaGCGCUGGCaCGa---CGCGCGGuacua -5'
29553 5' -59.3 NC_006151.1 + 137677 0.66 0.707874
Target:  5'- -cCGcCGugCG-GCUGcCGCGCCAaGAUg -3'
miRNA:   3'- aaGC-GCugGCaCGAC-GCGCGGUaCUA- -5'
29553 5' -59.3 NC_006151.1 + 119086 0.66 0.707874
Target:  5'- cUCGCaGGCCGcgGCgcucgGCGCGUaCGUGAg -3'
miRNA:   3'- aAGCG-CUGGCa-CGa----CGCGCG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 104883 0.66 0.707874
Target:  5'- -aCGCG-CC-UGCUGCGCGagGUGGUg -3'
miRNA:   3'- aaGCGCuGGcACGACGCGCggUACUA- -5'
29553 5' -59.3 NC_006151.1 + 143010 0.66 0.703858
Target:  5'- aUCGCGGCuCGccuucuaggguugGCUGUGUGCCAagGAUg -3'
miRNA:   3'- aAGCGCUG-GCa------------CGACGCGCGGUa-CUA- -5'
29553 5' -59.3 NC_006151.1 + 106128 0.66 0.696806
Target:  5'- -aCGCGGCCGUGCUGgccacgacgcucuCGCGCa----- -3'
miRNA:   3'- aaGCGCUGGCACGAC-------------GCGCGguacua -5'
29553 5' -59.3 NC_006151.1 + 139305 0.66 0.687701
Target:  5'- -cUGCGGCgCGUGCUGCuCGaCCGUGc- -3'
miRNA:   3'- aaGCGCUG-GCACGACGcGC-GGUACua -5'
29553 5' -59.3 NC_006151.1 + 118109 0.66 0.687701
Target:  5'- -cCGCGACC-UGCUgGCGCuGCuCGUGGc -3'
miRNA:   3'- aaGCGCUGGcACGA-CGCG-CG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 27200 0.66 0.687701
Target:  5'- -cCGCGcagaaggcGCCGggGCcccGCGCGCCGUGGa -3'
miRNA:   3'- aaGCGC--------UGGCa-CGa--CGCGCGGUACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.