miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 5' -59.3 NC_006151.1 + 4323 0.71 0.404446
Target:  5'- -aCGCGGCCGgGCUGCGCGgCGg--- -3'
miRNA:   3'- aaGCGCUGGCaCGACGCGCgGUacua -5'
29553 5' -59.3 NC_006151.1 + 8823 0.68 0.57526
Target:  5'- -cCGCGugUGUGC-GCGCGCCu---- -3'
miRNA:   3'- aaGCGCugGCACGaCGCGCGGuacua -5'
29553 5' -59.3 NC_006151.1 + 27200 0.66 0.687701
Target:  5'- -cCGCGcagaaggcGCCGggGCcccGCGCGCCGUGGa -3'
miRNA:   3'- aaGCGC--------UGGCa-CGa--CGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 46593 0.67 0.636613
Target:  5'- --gGCGGCCGUGCUGagGCGCgAgcaGAg -3'
miRNA:   3'- aagCGCUGGCACGACg-CGCGgUa--CUa -5'
29553 5' -59.3 NC_006151.1 + 49616 0.66 0.687701
Target:  5'- gUCcUGGCgGUGCUGCGCgaguggggguggGCCGUGGa -3'
miRNA:   3'- aAGcGCUGgCACGACGCG------------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 57313 0.66 0.677541
Target:  5'- -gCGCGGCCGaagccGCUGCGCGaCggGAa -3'
miRNA:   3'- aaGCGCUGGCa----CGACGCGCgGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 62051 0.67 0.636613
Target:  5'- -gCGUGGCgGUGCacgcGCGCGCCgucGUGAc -3'
miRNA:   3'- aaGCGCUGgCACGa---CGCGCGG---UACUa -5'
29553 5' -59.3 NC_006151.1 + 64298 0.66 0.717868
Target:  5'- gUUGuCGGgCGUGCcgcaGCGCGCCGUGc- -3'
miRNA:   3'- aAGC-GCUgGCACGa---CGCGCGGUACua -5'
29553 5' -59.3 NC_006151.1 + 65197 0.71 0.404446
Target:  5'- -cCGCGAgCGcGCUGCGCgaguugaggGCCAUGAg -3'
miRNA:   3'- aaGCGCUgGCaCGACGCG---------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 65376 0.69 0.525172
Target:  5'- -gCGUGcACCacGUGCcccggGCGCGCCGUGAg -3'
miRNA:   3'- aaGCGC-UGG--CACGa----CGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 71219 0.67 0.646871
Target:  5'- -cCGUGACCGUGggcgcGCGCGCCGa--- -3'
miRNA:   3'- aaGCGCUGGCACga---CGCGCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 73396 0.66 0.677541
Target:  5'- -gCGCGGCCGccGCguacGCG-GCCGUGAa -3'
miRNA:   3'- aaGCGCUGGCa-CGa---CGCgCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 83637 0.68 0.555059
Target:  5'- --gGCGGCC-UGgUGCuGCGCCGUGAc -3'
miRNA:   3'- aagCGCUGGcACgACG-CGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 84325 0.68 0.585425
Target:  5'- -cCGCGACCGUGCgcgGCcuCGCCGa--- -3'
miRNA:   3'- aaGCGCUGGCACGa--CGc-GCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 84624 0.67 0.667344
Target:  5'- -gCGCGGCCGccGCgGCGCuggacaacGCCAUGGc -3'
miRNA:   3'- aaGCGCUGGCa-CGaCGCG--------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 85493 0.77 0.172921
Target:  5'- -aCGCG-CCGcUGCUGCGCGCCAcGGUg -3'
miRNA:   3'- aaGCGCuGGC-ACGACGCGCGGUaCUA- -5'
29553 5' -59.3 NC_006151.1 + 86319 0.71 0.404446
Target:  5'- cUgGgGGCCGUGCUcgccCGCGCCGUGGg -3'
miRNA:   3'- aAgCgCUGGCACGAc---GCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 86678 0.67 0.616094
Target:  5'- cUCGaCGGCCGUgaacaacaugcuGCUGCGCGaCCGcUGGg -3'
miRNA:   3'- aAGC-GCUGGCA------------CGACGCGC-GGU-ACUa -5'
29553 5' -59.3 NC_006151.1 + 92424 0.67 0.636613
Target:  5'- aUCGCGcCCGUguucccgcugguGCUGCGCuGCCGcGAc -3'
miRNA:   3'- aAGCGCuGGCA------------CGACGCG-CGGUaCUa -5'
29553 5' -59.3 NC_006151.1 + 99301 0.67 0.616094
Target:  5'- -gCGCG-CCGUGCUggaccGCGCGCCccgccUGAc -3'
miRNA:   3'- aaGCGCuGGCACGA-----CGCGCGGu----ACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.