miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 5' -59.3 NC_006151.1 + 121180 0.79 0.123754
Target:  5'- -aCGCGGCCGUGCUGCacGCGCUcgGGg -3'
miRNA:   3'- aaGCGCUGGCACGACG--CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 85493 0.77 0.172921
Target:  5'- -aCGCG-CCGcUGCUGCGCGCCAcGGUg -3'
miRNA:   3'- aaGCGCuGGC-ACGACGCGCGGUaCUA- -5'
29553 5' -59.3 NC_006151.1 + 103683 0.74 0.29581
Target:  5'- -gCGCGGCggggGUGCUGCGCGCCGccgUGGa -3'
miRNA:   3'- aaGCGCUGg---CACGACGCGCGGU---ACUa -5'
29553 5' -59.3 NC_006151.1 + 118048 0.72 0.379145
Target:  5'- -cCGUGACCGUGCgcgcCGCGCCGcUGGg -3'
miRNA:   3'- aaGCGCUGGCACGac--GCGCGGU-ACUa -5'
29553 5' -59.3 NC_006151.1 + 112434 0.71 0.395894
Target:  5'- -cCGCGccGCCGccGCcGCGCGCCAUGGg -3'
miRNA:   3'- aaGCGC--UGGCa-CGaCGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 4323 0.71 0.404446
Target:  5'- -aCGCGGCCGgGCUGCGCGgCGg--- -3'
miRNA:   3'- aaGCGCUGGCaCGACGCGCgGUacua -5'
29553 5' -59.3 NC_006151.1 + 86319 0.71 0.404446
Target:  5'- cUgGgGGCCGUGCUcgccCGCGCCGUGGg -3'
miRNA:   3'- aAgCgCUGGCACGAc---GCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 65197 0.71 0.404446
Target:  5'- -cCGCGAgCGcGCUGCGCgaguugaggGCCAUGAg -3'
miRNA:   3'- aaGCGCUgGCaCGACGCG---------CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 123894 0.7 0.448896
Target:  5'- -cCGCGgccccGCCGUGCgGCGCggcgGCCGUGAc -3'
miRNA:   3'- aaGCGC-----UGGCACGaCGCG----CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 113589 0.7 0.476826
Target:  5'- -cUGCGACCcc-CUGUGCGCCGUGGc -3'
miRNA:   3'- aaGCGCUGGcacGACGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 105722 0.7 0.486326
Target:  5'- cUCGaCGgcGCCGUGC-GCGCGCC-UGAa -3'
miRNA:   3'- aAGC-GC--UGGCACGaCGCGCGGuACUa -5'
29553 5' -59.3 NC_006151.1 + 136844 0.7 0.486326
Target:  5'- -aCGCGGCCGccgGCcucGCGCGCCgcGUGAc -3'
miRNA:   3'- aaGCGCUGGCa--CGa--CGCGCGG--UACUa -5'
29553 5' -59.3 NC_006151.1 + 103999 0.69 0.515343
Target:  5'- gUgGCGGCCGUGgagGCGCGCCGc--- -3'
miRNA:   3'- aAgCGCUGGCACga-CGCGCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 65376 0.69 0.525172
Target:  5'- -gCGUGcACCacGUGCcccggGCGCGCCGUGAg -3'
miRNA:   3'- aaGCGC-UGG--CACGa----CGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 103815 0.69 0.545036
Target:  5'- gUCgGCGGCCGUgGCgGCG-GCCGUGGa -3'
miRNA:   3'- aAG-CGCUGGCA-CGaCGCgCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 83637 0.68 0.555059
Target:  5'- --gGCGGCC-UGgUGCuGCGCCGUGAc -3'
miRNA:   3'- aagCGCUGGcACgACG-CGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 8823 0.68 0.57526
Target:  5'- -cCGCGugUGUGC-GCGCGCCu---- -3'
miRNA:   3'- aaGCGCugGCACGaCGCGCGGuacua -5'
29553 5' -59.3 NC_006151.1 + 138812 0.68 0.585425
Target:  5'- -aCGCGGCCuucGUGUacGCGCGCCAgGAg -3'
miRNA:   3'- aaGCGCUGG---CACGa-CGCGCGGUaCUa -5'
29553 5' -59.3 NC_006151.1 + 84325 0.68 0.585425
Target:  5'- -cCGCGACCGUGCgcgGCcuCGCCGa--- -3'
miRNA:   3'- aaGCGCUGGCACGa--CGc-GCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 118835 0.68 0.595623
Target:  5'- --aGCG-CCGUGCUGCcCGCCgacGUGAc -3'
miRNA:   3'- aagCGCuGGCACGACGcGCGG---UACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.