Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29553 | 5' | -59.3 | NC_006151.1 | + | 106503 | 0.68 | 0.605849 |
Target: 5'- --aGCGGCUG-GC-GCGCGCCGUGc- -3' miRNA: 3'- aagCGCUGGCaCGaCGCGCGGUACua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 128190 | 0.68 | 0.605849 |
Target: 5'- --gGCGAgCGUGCcGCGCuCCAUGGc -3' miRNA: 3'- aagCGCUgGCACGaCGCGcGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 131770 | 0.67 | 0.616094 |
Target: 5'- gUCGCGACCGcgGCcgcggGCGcCGCCGUc-- -3' miRNA: 3'- aAGCGCUGGCa-CGa----CGC-GCGGUAcua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 86678 | 0.67 | 0.616094 |
Target: 5'- cUCGaCGGCCGUgaacaacaugcuGCUGCGCGaCCGcUGGg -3' miRNA: 3'- aAGC-GCUGGCA------------CGACGCGC-GGU-ACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 99301 | 0.67 | 0.616094 |
Target: 5'- -gCGCG-CCGUGCUggaccGCGCGCCccgccUGAc -3' miRNA: 3'- aaGCGCuGGCACGA-----CGCGCGGu----ACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 92424 | 0.67 | 0.636613 |
Target: 5'- aUCGCGcCCGUguucccgcugguGCUGCGCuGCCGcGAc -3' miRNA: 3'- aAGCGCuGGCA------------CGACGCG-CGGUaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 46593 | 0.67 | 0.636613 |
Target: 5'- --gGCGGCCGUGCUGagGCGCgAgcaGAg -3' miRNA: 3'- aagCGCUGGCACGACg-CGCGgUa--CUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 120790 | 0.67 | 0.636613 |
Target: 5'- -aCGCGGCCGacGCggaGCGCGCCGc--- -3' miRNA: 3'- aaGCGCUGGCa-CGa--CGCGCGGUacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 100418 | 0.67 | 0.636613 |
Target: 5'- -gCGcCGACgCGggggcGCUGCGCGgCGUGAUg -3' miRNA: 3'- aaGC-GCUG-GCa----CGACGCGCgGUACUA- -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 62051 | 0.67 | 0.636613 |
Target: 5'- -gCGUGGCgGUGCacgcGCGCGCCgucGUGAc -3' miRNA: 3'- aaGCGCUGgCACGa---CGCGCGG---UACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 71219 | 0.67 | 0.646871 |
Target: 5'- -cCGUGACCGUGggcgcGCGCGCCGa--- -3' miRNA: 3'- aaGCGCUGGCACga---CGCGCGGUacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 118210 | 0.67 | 0.657117 |
Target: 5'- -aCGUGGCCGUGgUGgcggGCGCCcgGAc -3' miRNA: 3'- aaGCGCUGGCACgACg---CGCGGuaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 120565 | 0.67 | 0.667344 |
Target: 5'- aUCGCGGCCGUGaaGCGCuucuCgGUGGa -3' miRNA: 3'- aAGCGCUGGCACgaCGCGc---GgUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 84624 | 0.67 | 0.667344 |
Target: 5'- -gCGCGGCCGccGCgGCGCuggacaacGCCAUGGc -3' miRNA: 3'- aaGCGCUGGCa-CGaCGCG--------CGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103225 | 0.66 | 0.674486 |
Target: 5'- -gCGCGugCGcgcgauggaggaccUGCUGCggcacauccGCGCCAUGGg -3' miRNA: 3'- aaGCGCugGC--------------ACGACG---------CGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 73396 | 0.66 | 0.677541 |
Target: 5'- -gCGCGGCCGccGCguacGCG-GCCGUGAa -3' miRNA: 3'- aaGCGCUGGCa-CGa---CGCgCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 57313 | 0.66 | 0.677541 |
Target: 5'- -gCGCGGCCGaagccGCUGCGCGaCggGAa -3' miRNA: 3'- aaGCGCUGGCa----CGACGCGCgGuaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 113030 | 0.66 | 0.677541 |
Target: 5'- -aCGCGugCGccgggUGCUGCGCGgCGgcgGAg -3' miRNA: 3'- aaGCGCugGC-----ACGACGCGCgGUa--CUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 49616 | 0.66 | 0.687701 |
Target: 5'- gUCcUGGCgGUGCUGCGCgaguggggguggGCCGUGGa -3' miRNA: 3'- aAGcGCUGgCACGACGCG------------CGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103745 | 0.66 | 0.687701 |
Target: 5'- -gCGCGGCaGUGCgaggaGCGCGCCGcGGc -3' miRNA: 3'- aaGCGCUGgCACGa----CGCGCGGUaCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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