miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 5' -59.3 NC_006151.1 + 100418 0.67 0.636613
Target:  5'- -gCGcCGACgCGggggcGCUGCGCGgCGUGAUg -3'
miRNA:   3'- aaGC-GCUG-GCa----CGACGCGCgGUACUA- -5'
29553 5' -59.3 NC_006151.1 + 103225 0.66 0.674486
Target:  5'- -gCGCGugCGcgcgauggaggaccUGCUGCggcacauccGCGCCAUGGg -3'
miRNA:   3'- aaGCGCugGC--------------ACGACG---------CGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 103683 0.74 0.29581
Target:  5'- -gCGCGGCggggGUGCUGCGCGCCGccgUGGa -3'
miRNA:   3'- aaGCGCUGg---CACGACGCGCGGU---ACUa -5'
29553 5' -59.3 NC_006151.1 + 103745 0.66 0.687701
Target:  5'- -gCGCGGCaGUGCgaggaGCGCGCCGcGGc -3'
miRNA:   3'- aaGCGCUGgCACGa----CGCGCGGUaCUa -5'
29553 5' -59.3 NC_006151.1 + 103815 0.69 0.545036
Target:  5'- gUCgGCGGCCGUgGCgGCG-GCCGUGGa -3'
miRNA:   3'- aAG-CGCUGGCA-CGaCGCgCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 103999 0.69 0.515343
Target:  5'- gUgGCGGCCGUGgagGCGCGCCGc--- -3'
miRNA:   3'- aAgCGCUGGCACga-CGCGCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 104883 0.66 0.707874
Target:  5'- -aCGCG-CC-UGCUGCGCGagGUGGUg -3'
miRNA:   3'- aaGCGCuGGcACGACGCGCggUACUA- -5'
29553 5' -59.3 NC_006151.1 + 105722 0.7 0.486326
Target:  5'- cUCGaCGgcGCCGUGC-GCGCGCC-UGAa -3'
miRNA:   3'- aAGC-GC--UGGCACGaCGCGCGGuACUa -5'
29553 5' -59.3 NC_006151.1 + 106128 0.66 0.696806
Target:  5'- -aCGCGGCCGUGCUGgccacgacgcucuCGCGCa----- -3'
miRNA:   3'- aaGCGCUGGCACGAC-------------GCGCGguacua -5'
29553 5' -59.3 NC_006151.1 + 106503 0.68 0.605849
Target:  5'- --aGCGGCUG-GC-GCGCGCCGUGc- -3'
miRNA:   3'- aagCGCUGGCaCGaCGCGCGGUACua -5'
29553 5' -59.3 NC_006151.1 + 112434 0.71 0.395894
Target:  5'- -cCGCGccGCCGccGCcGCGCGCCAUGGg -3'
miRNA:   3'- aaGCGC--UGGCa-CGaCGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 113030 0.66 0.677541
Target:  5'- -aCGCGugCGccgggUGCUGCGCGgCGgcgGAg -3'
miRNA:   3'- aaGCGCugGC-----ACGACGCGCgGUa--CUa -5'
29553 5' -59.3 NC_006151.1 + 113589 0.7 0.476826
Target:  5'- -cUGCGACCcc-CUGUGCGCCGUGGc -3'
miRNA:   3'- aaGCGCUGGcacGACGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 118048 0.72 0.379145
Target:  5'- -cCGUGACCGUGCgcgcCGCGCCGcUGGg -3'
miRNA:   3'- aaGCGCUGGCACGac--GCGCGGU-ACUa -5'
29553 5' -59.3 NC_006151.1 + 118109 0.66 0.687701
Target:  5'- -cCGCGACC-UGCUgGCGCuGCuCGUGGc -3'
miRNA:   3'- aaGCGCUGGcACGA-CGCG-CG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 118210 0.67 0.657117
Target:  5'- -aCGUGGCCGUGgUGgcggGCGCCcgGAc -3'
miRNA:   3'- aaGCGCUGGCACgACg---CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 118835 0.68 0.595623
Target:  5'- --aGCG-CCGUGCUGCcCGCCgacGUGAc -3'
miRNA:   3'- aagCGCuGGCACGACGcGCGG---UACUa -5'
29553 5' -59.3 NC_006151.1 + 119086 0.66 0.707874
Target:  5'- cUCGCaGGCCGcgGCgcucgGCGCGUaCGUGAg -3'
miRNA:   3'- aAGCG-CUGGCa-CGa----CGCGCG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 120565 0.67 0.667344
Target:  5'- aUCGCGGCCGUGaaGCGCuucuCgGUGGa -3'
miRNA:   3'- aAGCGCUGGCACgaCGCGc---GgUACUa -5'
29553 5' -59.3 NC_006151.1 + 120790 0.67 0.636613
Target:  5'- -aCGCGGCCGacGCggaGCGCGCCGc--- -3'
miRNA:   3'- aaGCGCUGGCa-CGa--CGCGCGGUacua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.