Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29553 | 5' | -59.3 | NC_006151.1 | + | 106503 | 0.68 | 0.605849 |
Target: 5'- --aGCGGCUG-GC-GCGCGCCGUGc- -3' miRNA: 3'- aagCGCUGGCaCGaCGCGCGGUACua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 106128 | 0.66 | 0.696806 |
Target: 5'- -aCGCGGCCGUGCUGgccacgacgcucuCGCGCa----- -3' miRNA: 3'- aaGCGCUGGCACGAC-------------GCGCGguacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 105722 | 0.7 | 0.486326 |
Target: 5'- cUCGaCGgcGCCGUGC-GCGCGCC-UGAa -3' miRNA: 3'- aAGC-GC--UGGCACGaCGCGCGGuACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 104883 | 0.66 | 0.707874 |
Target: 5'- -aCGCG-CC-UGCUGCGCGagGUGGUg -3' miRNA: 3'- aaGCGCuGGcACGACGCGCggUACUA- -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103999 | 0.69 | 0.515343 |
Target: 5'- gUgGCGGCCGUGgagGCGCGCCGc--- -3' miRNA: 3'- aAgCGCUGGCACga-CGCGCGGUacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103815 | 0.69 | 0.545036 |
Target: 5'- gUCgGCGGCCGUgGCgGCG-GCCGUGGa -3' miRNA: 3'- aAG-CGCUGGCA-CGaCGCgCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103745 | 0.66 | 0.687701 |
Target: 5'- -gCGCGGCaGUGCgaggaGCGCGCCGcGGc -3' miRNA: 3'- aaGCGCUGgCACGa----CGCGCGGUaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103683 | 0.74 | 0.29581 |
Target: 5'- -gCGCGGCggggGUGCUGCGCGCCGccgUGGa -3' miRNA: 3'- aaGCGCUGg---CACGACGCGCGGU---ACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103225 | 0.66 | 0.674486 |
Target: 5'- -gCGCGugCGcgcgauggaggaccUGCUGCggcacauccGCGCCAUGGg -3' miRNA: 3'- aaGCGCugGC--------------ACGACG---------CGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 100418 | 0.67 | 0.636613 |
Target: 5'- -gCGcCGACgCGggggcGCUGCGCGgCGUGAUg -3' miRNA: 3'- aaGC-GCUG-GCa----CGACGCGCgGUACUA- -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 99301 | 0.67 | 0.616094 |
Target: 5'- -gCGCG-CCGUGCUggaccGCGCGCCccgccUGAc -3' miRNA: 3'- aaGCGCuGGCACGA-----CGCGCGGu----ACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 92424 | 0.67 | 0.636613 |
Target: 5'- aUCGCGcCCGUguucccgcugguGCUGCGCuGCCGcGAc -3' miRNA: 3'- aAGCGCuGGCA------------CGACGCG-CGGUaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 86678 | 0.67 | 0.616094 |
Target: 5'- cUCGaCGGCCGUgaacaacaugcuGCUGCGCGaCCGcUGGg -3' miRNA: 3'- aAGC-GCUGGCA------------CGACGCGC-GGU-ACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 86319 | 0.71 | 0.404446 |
Target: 5'- cUgGgGGCCGUGCUcgccCGCGCCGUGGg -3' miRNA: 3'- aAgCgCUGGCACGAc---GCGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 85493 | 0.77 | 0.172921 |
Target: 5'- -aCGCG-CCGcUGCUGCGCGCCAcGGUg -3' miRNA: 3'- aaGCGCuGGC-ACGACGCGCGGUaCUA- -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 84624 | 0.67 | 0.667344 |
Target: 5'- -gCGCGGCCGccGCgGCGCuggacaacGCCAUGGc -3' miRNA: 3'- aaGCGCUGGCa-CGaCGCG--------CGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 84325 | 0.68 | 0.585425 |
Target: 5'- -cCGCGACCGUGCgcgGCcuCGCCGa--- -3' miRNA: 3'- aaGCGCUGGCACGa--CGc-GCGGUacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 83637 | 0.68 | 0.555059 |
Target: 5'- --gGCGGCC-UGgUGCuGCGCCGUGAc -3' miRNA: 3'- aagCGCUGGcACgACG-CGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 73396 | 0.66 | 0.677541 |
Target: 5'- -gCGCGGCCGccGCguacGCG-GCCGUGAa -3' miRNA: 3'- aaGCGCUGGCa-CGa---CGCgCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 71219 | 0.67 | 0.646871 |
Target: 5'- -cCGUGACCGUGggcgcGCGCGCCGa--- -3' miRNA: 3'- aaGCGCUGGCACga---CGCGCGGUacua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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