miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 5' -59.3 NC_006151.1 + 143010 0.66 0.703858
Target:  5'- aUCGCGGCuCGccuucuaggguugGCUGUGUGCCAagGAUg -3'
miRNA:   3'- aAGCGCUG-GCa------------CGACGCGCGGUa-CUA- -5'
29553 5' -59.3 NC_006151.1 + 139305 0.66 0.687701
Target:  5'- -cUGCGGCgCGUGCUGCuCGaCCGUGc- -3'
miRNA:   3'- aaGCGCUG-GCACGACGcGC-GGUACua -5'
29553 5' -59.3 NC_006151.1 + 138812 0.68 0.585425
Target:  5'- -aCGCGGCCuucGUGUacGCGCGCCAgGAg -3'
miRNA:   3'- aaGCGCUGG---CACGa-CGCGCGGUaCUa -5'
29553 5' -59.3 NC_006151.1 + 137677 0.66 0.707874
Target:  5'- -cCGcCGugCG-GCUGcCGCGCCAaGAUg -3'
miRNA:   3'- aaGC-GCugGCaCGAC-GCGCGGUaCUA- -5'
29553 5' -59.3 NC_006151.1 + 136844 0.7 0.486326
Target:  5'- -aCGCGGCCGccgGCcucGCGCGCCgcGUGAc -3'
miRNA:   3'- aaGCGCUGGCa--CGa--CGCGCGG--UACUa -5'
29553 5' -59.3 NC_006151.1 + 132170 0.66 0.687701
Target:  5'- -gCGCGGCCG-GCaccgGCGCGCCc---- -3'
miRNA:   3'- aaGCGCUGGCaCGa---CGCGCGGuacua -5'
29553 5' -59.3 NC_006151.1 + 131770 0.67 0.616094
Target:  5'- gUCGCGACCGcgGCcgcggGCGcCGCCGUc-- -3'
miRNA:   3'- aAGCGCUGGCa-CGa----CGC-GCGGUAcua -5'
29553 5' -59.3 NC_006151.1 + 128190 0.68 0.605849
Target:  5'- --gGCGAgCGUGCcGCGCuCCAUGGc -3'
miRNA:   3'- aagCGCUgGCACGaCGCGcGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 123894 0.7 0.448896
Target:  5'- -cCGCGgccccGCCGUGCgGCGCggcgGCCGUGAc -3'
miRNA:   3'- aaGCGC-----UGGCACGaCGCG----CGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 121180 0.79 0.123754
Target:  5'- -aCGCGGCCGUGCUGCacGCGCUcgGGg -3'
miRNA:   3'- aaGCGCUGGCACGACG--CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 120790 0.67 0.636613
Target:  5'- -aCGCGGCCGacGCggaGCGCGCCGc--- -3'
miRNA:   3'- aaGCGCUGGCa-CGa--CGCGCGGUacua -5'
29553 5' -59.3 NC_006151.1 + 120565 0.67 0.667344
Target:  5'- aUCGCGGCCGUGaaGCGCuucuCgGUGGa -3'
miRNA:   3'- aAGCGCUGGCACgaCGCGc---GgUACUa -5'
29553 5' -59.3 NC_006151.1 + 119086 0.66 0.707874
Target:  5'- cUCGCaGGCCGcgGCgcucgGCGCGUaCGUGAg -3'
miRNA:   3'- aAGCG-CUGGCa-CGa----CGCGCG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 118835 0.68 0.595623
Target:  5'- --aGCG-CCGUGCUGCcCGCCgacGUGAc -3'
miRNA:   3'- aagCGCuGGCACGACGcGCGG---UACUa -5'
29553 5' -59.3 NC_006151.1 + 118210 0.67 0.657117
Target:  5'- -aCGUGGCCGUGgUGgcggGCGCCcgGAc -3'
miRNA:   3'- aaGCGCUGGCACgACg---CGCGGuaCUa -5'
29553 5' -59.3 NC_006151.1 + 118109 0.66 0.687701
Target:  5'- -cCGCGACC-UGCUgGCGCuGCuCGUGGc -3'
miRNA:   3'- aaGCGCUGGcACGA-CGCG-CG-GUACUa -5'
29553 5' -59.3 NC_006151.1 + 118048 0.72 0.379145
Target:  5'- -cCGUGACCGUGCgcgcCGCGCCGcUGGg -3'
miRNA:   3'- aaGCGCUGGCACGac--GCGCGGU-ACUa -5'
29553 5' -59.3 NC_006151.1 + 113589 0.7 0.476826
Target:  5'- -cUGCGACCcc-CUGUGCGCCGUGGc -3'
miRNA:   3'- aaGCGCUGGcacGACGCGCGGUACUa -5'
29553 5' -59.3 NC_006151.1 + 113030 0.66 0.677541
Target:  5'- -aCGCGugCGccgggUGCUGCGCGgCGgcgGAg -3'
miRNA:   3'- aaGCGCugGC-----ACGACGCGCgGUa--CUa -5'
29553 5' -59.3 NC_006151.1 + 112434 0.71 0.395894
Target:  5'- -cCGCGccGCCGccGCcGCGCGCCAUGGg -3'
miRNA:   3'- aaGCGC--UGGCa-CGaCGCGCGGUACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.