Results 21 - 40 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 95603 | 0.69 | 0.72383 |
Target: 5'- uACUCGCGCGcaaagucgggcccGUGCAGCGagg-CCAGg -3' miRNA: 3'- -UGAGCGCGCa------------CAUGUCGCgguaGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 135756 | 0.69 | 0.687701 |
Target: 5'- uCUCGUacGCGUGggACGGCGCCGggCUGGa -3' miRNA: 3'- uGAGCG--CGCACa-UGUCGCGGUa-GGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 69419 | 0.69 | 0.717868 |
Target: 5'- aGCUCGuCGCGccagGCGGCGCCG-CCGc -3' miRNA: 3'- -UGAGC-GCGCaca-UGUCGCGGUaGGUc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 62047 | 0.69 | 0.717868 |
Target: 5'- cGC-CGCGUGgcgGUGCAcgcgcGCGCCGUCguGa -3' miRNA: 3'- -UGaGCGCGCa--CAUGU-----CGCGGUAGguC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 58735 | 0.69 | 0.727788 |
Target: 5'- cGCUCGCGuCGc--GCAGCGCCGcggCCAc -3' miRNA: 3'- -UGAGCGC-GCacaUGUCGCGGUa--GGUc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 67509 | 0.69 | 0.717868 |
Target: 5'- gGCUCGCGUccggGUcCAGgGCCA-CCAGg -3' miRNA: 3'- -UGAGCGCGca--CAuGUCgCGGUaGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 64000 | 0.69 | 0.677541 |
Target: 5'- uCUgCGUGCG-GUGCGGCGCCAggcgCCc- -3' miRNA: 3'- uGA-GCGCGCaCAUGUCGCGGUa---GGuc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 68259 | 0.68 | 0.766546 |
Target: 5'- gACgCGCGCGgcgacgGUcGCGGCGCCGggcgCCAc -3' miRNA: 3'- -UGaGCGCGCa-----CA-UGUCGCGGUa---GGUc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 122393 | 0.68 | 0.766546 |
Target: 5'- cGCgggCGCGCGcugGCGGCGCUcgCCGc -3' miRNA: 3'- -UGa--GCGCGCacaUGUCGCGGuaGGUc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 72380 | 0.68 | 0.775958 |
Target: 5'- cGCgcagCGuCGCGUGccgccGCAGCGUC-UCCAGa -3' miRNA: 3'- -UGa---GC-GCGCACa----UGUCGCGGuAGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 17405 | 0.68 | 0.775958 |
Target: 5'- cGCguggCGCGCGgcaGCAGgGCCAgcgagCCGGg -3' miRNA: 3'- -UGa---GCGCGCacaUGUCgCGGUa----GGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 2482 | 0.68 | 0.747371 |
Target: 5'- gGC-CGCGCG-GUgcccgaagGCGGCGCCcgcgucaaaGUCCGGg -3' miRNA: 3'- -UGaGCGCGCaCA--------UGUCGCGG---------UAGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 97989 | 0.68 | 0.737626 |
Target: 5'- uCUUGCcgggcgGCGUGgccgcguagGCGGCGCCggCCAGg -3' miRNA: 3'- uGAGCG------CGCACa--------UGUCGCGGuaGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 17339 | 0.68 | 0.747371 |
Target: 5'- aGCUCGUGCGUcucgguggugauGUagaACGGCGCCGUggggUCGGa -3' miRNA: 3'- -UGAGCGCGCA------------CA---UGUCGCGGUA----GGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 136937 | 0.68 | 0.757014 |
Target: 5'- aGC-CGgGCGccgACGGCGCCGUCCu- -3' miRNA: 3'- -UGaGCgCGCacaUGUCGCGGUAGGuc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 124850 | 0.68 | 0.747371 |
Target: 5'- cGCg-GCGCGUGUGCAGC-CUggCCAa -3' miRNA: 3'- -UGagCGCGCACAUGUCGcGGuaGGUc -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 82524 | 0.68 | 0.737626 |
Target: 5'- cGCggaugCGCGUGUcGUugAGCGCCc-CCAGc -3' miRNA: 3'- -UGa----GCGCGCA-CAugUCGCGGuaGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 117621 | 0.68 | 0.762747 |
Target: 5'- gGCUCGCGCGcgagcgugcccacGUGCAcgccGCGCUGcUCCGGg -3' miRNA: 3'- -UGAGCGCGCa------------CAUGU----CGCGGU-AGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 72091 | 0.67 | 0.8007 |
Target: 5'- aGCUCGCGgGccUGggcgagcgGCAGCGUCAuggggaagcgcagcUCCAGg -3' miRNA: 3'- -UGAGCGCgC--ACa-------UGUCGCGGU--------------AGGUC- -5' |
|||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 97289 | 0.67 | 0.803383 |
Target: 5'- gGCggCGgGCGUGUugAGCcgGCCcgUCGGg -3' miRNA: 3'- -UGa-GCgCGCACAugUCG--CGGuaGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home