miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 81501 0.66 0.477141
Target:  5'- -gCCGuCGGCGAgaG-CGCGGCccGCGUGAg -3'
miRNA:   3'- aaGGC-GCCGCUg-CgGCGCCG--CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 25376 0.66 0.468297
Target:  5'- -gCgGCGGUGACgGCgGCGGUGguucucgacCGCGAc -3'
miRNA:   3'- aaGgCGCCGCUG-CGgCGCCGC---------GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 106015 0.66 0.468297
Target:  5'- -cCUGCGGCucaACuaCGagaaGGCGCGCGAc -3'
miRNA:   3'- aaGGCGCCGc--UGcgGCg---CCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 129734 0.66 0.468297
Target:  5'- gUUCGCGGgcccgcgaGGCGCUGCaGCaccaGCGCGAa -3'
miRNA:   3'- aAGGCGCCg-------CUGCGGCGcCG----CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 41596 0.66 0.468297
Target:  5'- aUCCGCGGagccCGCCcCGGCcGCGCc- -3'
miRNA:   3'- aAGGCGCCgcu-GCGGcGCCG-CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 4388 0.66 0.468297
Target:  5'- cUCCcCGGCG-CGgggguCCGCGGCGCGg-- -3'
miRNA:   3'- aAGGcGCCGCuGC-----GGCGCCGCGCgcu -5'
29557 5' -65.9 NC_006151.1 + 43677 0.66 0.468297
Target:  5'- -cCCcUGGCGACGaggggcCCGcCGGCGCGaCGGg -3'
miRNA:   3'- aaGGcGCCGCUGC------GGC-GCCGCGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 106350 0.66 0.468297
Target:  5'- --aCGCGGUGgacACGCuggaCGCgGGCGCGCGn -3'
miRNA:   3'- aagGCGCCGC---UGCG----GCG-CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 129815 0.66 0.468297
Target:  5'- -cCCGUGaGCGcggagcGCGCgGCGGCGUagcccaGCGAc -3'
miRNA:   3'- aaGGCGC-CGC------UGCGgCGCCGCG------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 18902 0.66 0.471824
Target:  5'- gUCCGCGGUGGCGuUCGUGuGCaccuccucgccgaagGCGuCGAa -3'
miRNA:   3'- aAGGCGCCGCUGC-GGCGC-CG---------------CGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 118020 0.66 0.471824
Target:  5'- -cCCGCGaCGAUggagGCCGCGGCcaagaccgugaccguGCGCGc -3'
miRNA:   3'- aaGGCGCcGCUG----CGGCGCCG---------------CGCGCu -5'
29557 5' -65.9 NC_006151.1 + 68959 0.66 0.476252
Target:  5'- -cUCGCGGCgcacggacucgcgGACGCCggccaGCaGCGCGCGc -3'
miRNA:   3'- aaGGCGCCG-------------CUGCGG-----CGcCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 139574 0.66 0.476252
Target:  5'- gUCCGCGaGCGccugggcucGCGCCcccccgaGCGGCggcccguccggGCGCGGc -3'
miRNA:   3'- aAGGCGC-CGC---------UGCGG-------CGCCG-----------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 57351 0.66 0.477141
Target:  5'- gUCCGCGGgGcccucGCGCCGCcGCagccaguagGCGUGGc -3'
miRNA:   3'- aAGGCGCCgC-----UGCGGCGcCG---------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 64768 0.66 0.477141
Target:  5'- gUgCGCGGgGGCugGuuGcCGGgGCGCGAg -3'
miRNA:   3'- aAgGCGCCgCUG--CggC-GCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 68392 0.66 0.477141
Target:  5'- -gCCGCGGCcACcuCCaUGGCGCGCGc -3'
miRNA:   3'- aaGGCGCCGcUGc-GGcGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 101753 0.66 0.477141
Target:  5'- -aCC-CGGCGGcCGCCGCGcCGC-CGAc -3'
miRNA:   3'- aaGGcGCCGCU-GCGGCGCcGCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 5026 0.66 0.477141
Target:  5'- cUCCGgGGCcggggccgggGAgGCCGCGGCGgaggaggagGCGGa -3'
miRNA:   3'- aAGGCgCCG----------CUgCGGCGCCGCg--------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 74077 0.66 0.477141
Target:  5'- gUCCaCGGCGACGCa--GGCGuUGUGGa -3'
miRNA:   3'- aAGGcGCCGCUGCGgcgCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 113646 0.66 0.477141
Target:  5'- --gCGCGGCGACG-CGCuGCGCaagGCGc -3'
miRNA:   3'- aagGCGCCGCUGCgGCGcCGCG---CGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.