miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 652 0.69 0.298755
Target:  5'- cUUCCGgGGCG-CgGCCGgGGCGgGCu- -3'
miRNA:   3'- -AAGGCgCCGCuG-CGGCgCCGCgCGcu -5'
29557 5' -65.9 NC_006151.1 + 676 0.69 0.305333
Target:  5'- cUCCGCGGau-CGCauCGGCGCGcCGAg -3'
miRNA:   3'- aAGGCGCCgcuGCGgcGCCGCGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 727 0.67 0.400825
Target:  5'- gUCCGCGGgCGGgGgcuuccgcuCCGCGGCGCcCGc -3'
miRNA:   3'- aAGGCGCC-GCUgC---------GGCGCCGCGcGCu -5'
29557 5' -65.9 NC_006151.1 + 2113 0.67 0.400825
Target:  5'- -gCCGCGGggccggccguCGcCGCCGCGGaCGC-CGAc -3'
miRNA:   3'- aaGGCGCC----------GCuGCGGCGCC-GCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 2201 0.72 0.191311
Target:  5'- -cCCGCGGgccggugggucuccaCGGCGCCcccgGCGGCGgCGCGGa -3'
miRNA:   3'- aaGGCGCC---------------GCUGCGG----CGCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 2282 0.7 0.250071
Target:  5'- -gCCgGCGG-GGCGcCCGCGGCG-GCGAc -3'
miRNA:   3'- aaGG-CGCCgCUGC-GGCGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 2336 0.68 0.346387
Target:  5'- -gCCuCGGCGucgggcuccagcaGCGCCGCGGCGCagaagGCGc -3'
miRNA:   3'- aaGGcGCCGC-------------UGCGGCGCCGCG-----CGCu -5'
29557 5' -65.9 NC_006151.1 + 3090 0.73 0.154415
Target:  5'- ---gGCGGCGAgcagcgccgagaggcCGCCGCGGCGCGgGu -3'
miRNA:   3'- aaggCGCCGCU---------------GCGGCGCCGCGCgCu -5'
29557 5' -65.9 NC_006151.1 + 3247 0.85 0.021823
Target:  5'- --gCGCGGCGgcggagcgggGCGCCGCGGCGCGCGGc -3'
miRNA:   3'- aagGCGCCGC----------UGCGGCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 3384 0.7 0.259838
Target:  5'- ---gGCGGCGagggccgccucggaGgGCCGCGGCGUGUGGg -3'
miRNA:   3'- aaggCGCCGC--------------UgCGGCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 3436 0.71 0.213014
Target:  5'- --aCGCGGCGGaagcCGCCGUcgGGCGCGgGGu -3'
miRNA:   3'- aagGCGCCGCU----GCGGCG--CCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 3678 0.74 0.142238
Target:  5'- -cCCGgGGCGGCGggccCCG-GGCGCGCGGc -3'
miRNA:   3'- aaGGCgCCGCUGC----GGCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 4008 0.71 0.208123
Target:  5'- -gCCGgGGCGAagaggGCCGCGGCGUagguccagGCGGc -3'
miRNA:   3'- aaGGCgCCGCUg----CGGCGCCGCG--------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 4151 0.69 0.31202
Target:  5'- -cCCGgGGaucGCGUCGCGGaGCGCGAg -3'
miRNA:   3'- aaGGCgCCgc-UGCGGCGCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 4334 0.72 0.194028
Target:  5'- cUgCGCGGCGGCGaagGCGGCGCG-GAc -3'
miRNA:   3'- aAgGCGCCGCUGCgg-CGCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 4388 0.66 0.468297
Target:  5'- cUCCcCGGCG-CGgggguCCGCGGCGCGg-- -3'
miRNA:   3'- aAGGcGCCGCuGC-----GGCGCCGCGCgcu -5'
29557 5' -65.9 NC_006151.1 + 4794 0.69 0.291648
Target:  5'- -gCCGCGGCGcgguagcGgGCCGCGGCcugGCGGa -3'
miRNA:   3'- aaGGCGCCGC-------UgCGGCGCCGcg-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 4859 0.66 0.442287
Target:  5'- gUCCcCGGCGcCGCCGUaGCGgaCGCGGc -3'
miRNA:   3'- aAGGcGCCGCuGCGGCGcCGC--GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 5026 0.66 0.477141
Target:  5'- cUCCGgGGCcggggccgggGAgGCCGCGGCGgaggaggagGCGGa -3'
miRNA:   3'- aAGGCgCCG----------CUgCGGCGCCGCg--------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 5090 0.74 0.135162
Target:  5'- -gCCGCGGCgGGCGCCggcggagacggugGCGGCccgGCGCGGg -3'
miRNA:   3'- aaGGCGCCG-CUGCGG-------------CGCCG---CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.