miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 5338 0.73 0.152935
Target:  5'- -gCCGCGGCGgaggGCGCCcucuccggcGCGGCGCcgGCGGg -3'
miRNA:   3'- aaGGCGCCGC----UGCGG---------CGCCGCG--CGCU- -5'
29557 5' -65.9 NC_006151.1 + 5613 0.67 0.392834
Target:  5'- cUCCgGCGGagggGGCGCCGCcgccgccgGGCGC-CGAg -3'
miRNA:   3'- aAGG-CGCCg---CUGCGGCG--------CCGCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 5691 0.66 0.468297
Target:  5'- -gCCGUGcCGGCGCUGCGGCcacCGCu- -3'
miRNA:   3'- aaGGCGCcGCUGCGGCGCCGc--GCGcu -5'
29557 5' -65.9 NC_006151.1 + 6120 0.71 0.238969
Target:  5'- --aCGgGGCGGCcucguggcuccgGCCGCGGC-CGCGAg -3'
miRNA:   3'- aagGCgCCGCUG------------CGGCGCCGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 7023 0.72 0.176121
Target:  5'- -cCCGCGGCGGCcaucucgGCuCGCccgggccaaugGGCGCGCGGa -3'
miRNA:   3'- aaGGCGCCGCUG-------CG-GCG-----------CCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 7107 0.76 0.103388
Target:  5'- cUCUGCGGCcAUcuugGCCGCGGCGCGCc- -3'
miRNA:   3'- aAGGCGCCGcUG----CGGCGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 7633 0.67 0.384947
Target:  5'- -cCCGCGGuCGccccacccGCGCCucgcgcuCGGCGCGCGc -3'
miRNA:   3'- aaGGCGCC-GC--------UGCGGc------GCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 7746 0.67 0.384947
Target:  5'- -aCCGgGaaGCGACGCCGgGGCGgGaGAa -3'
miRNA:   3'- aaGGCgC--CGCUGCGGCgCCGCgCgCU- -5'
29557 5' -65.9 NC_006151.1 + 8294 0.66 0.437183
Target:  5'- -cCCGCgcgGGCGccGCGucccgccccgagcccCCGgGGCGCGCGGg -3'
miRNA:   3'- aaGGCG---CCGC--UGC---------------GGCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 8678 0.68 0.332747
Target:  5'- -aCCGaCGGUgGugGCCG-GGCGgGCGGu -3'
miRNA:   3'- aaGGC-GCCG-CugCGGCgCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 9493 0.71 0.213014
Target:  5'- -gCCGCGGCGugGgagagCGgGGCGUGUGGg -3'
miRNA:   3'- aaGGCGCCGCugCg----GCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 10017 0.67 0.408105
Target:  5'- -gCgGCGGCGGuCGCCGCGGCcaggaggaaaaacGgGgGAg -3'
miRNA:   3'- aaGgCGCCGCU-GCGGCGCCG-------------CgCgCU- -5'
29557 5' -65.9 NC_006151.1 + 10414 0.69 0.298755
Target:  5'- --gCGgGGUGACGCCGCGGgUGgGcCGAg -3'
miRNA:   3'- aagGCgCCGCUGCGGCGCC-GCgC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 10467 0.73 0.151833
Target:  5'- --aCGCGGCGGCggugaaggaggagaGCCGCccGGCGCGCGc -3'
miRNA:   3'- aagGCGCCGCUG--------------CGGCG--CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 10916 0.67 0.377166
Target:  5'- -aCCGgGGUcgggcccacGGCGCCGagggugGGCGCGCGu -3'
miRNA:   3'- aaGGCgCCG---------CUGCGGCg-----CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 11233 0.66 0.4338
Target:  5'- -cCCGgGccGCGAgGgCCGCGGCG-GCGAc -3'
miRNA:   3'- aaGGCgC--CGCUgC-GGCGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 11697 0.73 0.15666
Target:  5'- -gCCGCGGgaCGGCGCgUGCGGCGCG-GAa -3'
miRNA:   3'- aaGGCGCC--GCUGCG-GCGCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 11879 0.72 0.194028
Target:  5'- -gUCGCGGCGAUucggGCCGCaucgaGGCGCGuCGGg -3'
miRNA:   3'- aaGGCGCCGCUG----CGGCG-----CCGCGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 13182 0.68 0.325727
Target:  5'- -gCCGCGGCcgucucggGGC-CCGCGGCGcCGCc- -3'
miRNA:   3'- aaGGCGCCG--------CUGcGGCGCCGC-GCGcu -5'
29557 5' -65.9 NC_006151.1 + 15029 0.67 0.408919
Target:  5'- -cCCGaggaGGUGcGCGuCCaCGGCGCGCGGg -3'
miRNA:   3'- aaGGCg---CCGC-UGC-GGcGCCGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.