miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 123018 0.77 0.080544
Target:  5'- -cCCGcCGGCgGACGCCGUGGCGUggGCGGa -3'
miRNA:   3'- aaGGC-GCCG-CUGCGGCGCCGCG--CGCU- -5'
29557 5' -65.9 NC_006151.1 + 64479 0.77 0.084689
Target:  5'- -gCCGCGGCgggGACGcCCGCGG-GCGCGGg -3'
miRNA:   3'- aaGGCGCCG---CUGC-GGCGCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 102488 0.77 0.084689
Target:  5'- cUCgGCGuGCuucaugGACGCCGCGGCGCGgGAc -3'
miRNA:   3'- aAGgCGC-CG------CUGCGGCGCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 97362 0.77 0.084689
Target:  5'- -gCCGCGGCGGCGgCG-GGCGCgGCGGg -3'
miRNA:   3'- aaGGCGCCGCUGCgGCgCCGCG-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 68264 0.77 0.089037
Target:  5'- --gCGCGGCGACgGUCGCGGCGC-CGGg -3'
miRNA:   3'- aagGCGCCGCUG-CGGCGCCGCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 99982 0.77 0.09129
Target:  5'- -cUCGUGGCGGCGCU--GGCGCGCGAg -3'
miRNA:   3'- aaGGCGCCGCUGCGGcgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 100875 0.76 0.093597
Target:  5'- -gCCGCcgugaaccuggaGGUGcuGCGCCGCGGCGCGCGc -3'
miRNA:   3'- aaGGCG------------CCGC--UGCGGCGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 31548 0.76 0.093597
Target:  5'- uUUCCuGC--UGGCGCCGCGGUGCGCGAa -3'
miRNA:   3'- -AAGG-CGccGCUGCGGCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 40138 0.76 0.095959
Target:  5'- gUCCGCGGCGGCGacggccggccCCGCGGCcCGCu- -3'
miRNA:   3'- aAGGCGCCGCUGC----------GGCGCCGcGCGcu -5'
29557 5' -65.9 NC_006151.1 + 104147 0.76 0.098377
Target:  5'- -aCCGCGGCuacGACGCCGCGGagcuGCGCc- -3'
miRNA:   3'- aaGGCGCCG---CUGCGGCGCCg---CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 7107 0.76 0.103388
Target:  5'- cUCUGCGGCcAUcuugGCCGCGGCGCGCc- -3'
miRNA:   3'- aAGGCGCCGcUG----CGGCGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 98218 0.76 0.105982
Target:  5'- gUgCGCGGCGGCGCC-C-GCGCGCGGa -3'
miRNA:   3'- aAgGCGCCGCUGCGGcGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 69761 0.76 0.105982
Target:  5'- -gCCGgGGCcacGCGCCGCGcGCGCGCGu -3'
miRNA:   3'- aaGGCgCCGc--UGCGGCGC-CGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 49998 0.75 0.111355
Target:  5'- gUCCGCGuuuGCG-CGCCGC-GCGCGCGGc -3'
miRNA:   3'- aAGGCGC---CGCuGCGGCGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 67983 0.75 0.114137
Target:  5'- -gUCGCGGCGGC-CCGcCGGCGcCGCGGc -3'
miRNA:   3'- aaGGCGCCGCUGcGGC-GCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 75129 0.75 0.114137
Target:  5'- gUCgGCGGcCGGCGgCGCGGCccaGCGCGGg -3'
miRNA:   3'- aAGgCGCC-GCUGCgGCGCCG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 81537 0.75 0.116695
Target:  5'- -gCCGCGGCGGCGCgcucCGCGGUGCacauggccgugguGCGGa -3'
miRNA:   3'- aaGGCGCCGCUGCG----GCGCCGCG-------------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 58442 0.75 0.116983
Target:  5'- cUCgGUGGCGugcGCGCgCGCGGCGuCGCGGu -3'
miRNA:   3'- aAGgCGCCGC---UGCG-GCGCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 17472 0.75 0.116983
Target:  5'- -gCCGCGGCGuguccuCGUCgGCGGCGCGCc- -3'
miRNA:   3'- aaGGCGCCGCu-----GCGG-CGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 139213 0.75 0.122874
Target:  5'- cUCCugGCGGCGACGCUGCcgcacaucGCGCGCGu -3'
miRNA:   3'- aAGG--CGCCGCUGCGGCGc-------CGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.