Results 41 - 60 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 139213 | 0.75 | 0.122874 |
Target: 5'- cUCCugGCGGCGACGCUGCcgcacaucGCGCGCGu -3' miRNA: 3'- aAGG--CGCCGCUGCGGCGc-------CGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 57616 | 0.75 | 0.122874 |
Target: 5'- -gCCGCGGCcGCcUCGaCGGCGCGCGAg -3' miRNA: 3'- aaGGCGCCGcUGcGGC-GCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 71071 | 0.75 | 0.125615 |
Target: 5'- -gCCGUGGUcuucuaccaccacGGCGCCGCGG-GCGCGGg -3' miRNA: 3'- aaGGCGCCG-------------CUGCGGCGCCgCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 128050 | 0.75 | 0.125923 |
Target: 5'- ---aGCGGCGGCaGCgGCGGCuGCGCGGg -3' miRNA: 3'- aaggCGCCGCUG-CGgCGCCG-CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 137097 | 0.74 | 0.129041 |
Target: 5'- cUUCGCGGUgcuggccgggGACGCCugGgGGCGCGCGAc -3' miRNA: 3'- aAGGCGCCG----------CUGCGG--CgCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 106676 | 0.74 | 0.129041 |
Target: 5'- -gCCGCGGCGcucggcGCGCCG-GGCGCcgGCGAc -3' miRNA: 3'- aaGGCGCCGC------UGCGGCgCCGCG--CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 30339 | 0.74 | 0.13223 |
Target: 5'- ---gGCGGCGGCGgCGCGaGgGCGCGAa -3' miRNA: 3'- aaggCGCCGCUGCgGCGC-CgCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 5090 | 0.74 | 0.135162 |
Target: 5'- -gCCGCGGCgGGCGCCggcggagacggugGCGGCccgGCGCGGg -3' miRNA: 3'- aaGGCGCCG-CUGCGG-------------CGCCG---CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 130370 | 0.74 | 0.135492 |
Target: 5'- -gCCGC-GCG-CGCCGCGGCguccaGCGCGAa -3' miRNA: 3'- aaGGCGcCGCuGCGGCGCCG-----CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 123234 | 0.74 | 0.136817 |
Target: 5'- gUUCCGCGcacggcgcgcguucuGCGAgGCCGcCGcGCGCGCGGg -3' miRNA: 3'- -AAGGCGC---------------CGCUgCGGC-GC-CGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 102381 | 0.74 | 0.138827 |
Target: 5'- -cCCGUGGCcaagcuGGCGCugguCGCGGCGCGCGu -3' miRNA: 3'- aaGGCGCCG------CUGCG----GCGCCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 135482 | 0.74 | 0.138827 |
Target: 5'- gUCCGC-GCGG-GCCagGCGGCGCGCGGc -3' miRNA: 3'- aAGGCGcCGCUgCGG--CGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 26354 | 0.74 | 0.138827 |
Target: 5'- -gCgGCGGCGggccGCGUCGgGGCGCGCGu -3' miRNA: 3'- aaGgCGCCGC----UGCGGCgCCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 44392 | 0.74 | 0.138827 |
Target: 5'- -gCCGCGGgGGCGCCGaggagggaGGgGCGCGu -3' miRNA: 3'- aaGGCGCCgCUGCGGCg-------CCgCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 58983 | 0.74 | 0.140182 |
Target: 5'- cUCCGCGggcacgagcgagagcGCGGCGuCCaGCGGCGCGuCGAa -3' miRNA: 3'- aAGGCGC---------------CGCUGC-GG-CGCCGCGC-GCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 53942 | 0.74 | 0.141894 |
Target: 5'- -gCCGCGGCGAgggacuugaaccaCGCCaGCGGCG-GCGGc -3' miRNA: 3'- aaGGCGCCGCU-------------GCGG-CGCCGCgCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 3678 | 0.74 | 0.142238 |
Target: 5'- -cCCGgGGCGGCGggccCCG-GGCGCGCGGc -3' miRNA: 3'- aaGGCgCCGCUGC----GGCgCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 123893 | 0.74 | 0.142238 |
Target: 5'- -gCCGCGGCccCGCCguGCGGCGCgGCGGc -3' miRNA: 3'- aaGGCGCCGcuGCGG--CGCCGCG-CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 104805 | 0.74 | 0.142238 |
Target: 5'- gUgCGCcGCGACcugGCgGCGGCGCGCGAc -3' miRNA: 3'- aAgGCGcCGCUG---CGgCGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 90109 | 0.74 | 0.145373 |
Target: 5'- -gCCGCGGCGACGCCcaugacgaggcagGCGGgGCGg-- -3' miRNA: 3'- aaGGCGCCGCUGCGG-------------CGCCgCGCgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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