miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 17121 0.67 0.417114
Target:  5'- cUCCgGCGGCGGUGCUGCGGgaG-GCGGc -3'
miRNA:   3'- aAGG-CGCCGCUGCGGCGCCg-CgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 17317 0.69 0.318818
Target:  5'- gUCCGCcgGGgGGCGCCGCGucagcuCGUGCGu -3'
miRNA:   3'- aAGGCG--CCgCUGCGGCGCc-----GCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 17390 0.7 0.244468
Target:  5'- gUCCGCacgaCGGgGCgCGUGGCGCGCGGc -3'
miRNA:   3'- aAGGCGcc--GCUgCG-GCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 17472 0.75 0.116983
Target:  5'- -gCCGCGGCGuguccuCGUCgGCGGCGCGCc- -3'
miRNA:   3'- aaGGCGCCGCu-----GCGG-CGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 18902 0.66 0.471824
Target:  5'- gUCCGCGGUGGCGuUCGUGuGCaccuccucgccgaagGCGuCGAa -3'
miRNA:   3'- aAGGCGCCGCUGC-GGCGC-CG---------------CGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 18998 0.69 0.279684
Target:  5'- --gCGCGGCGcgccaccaGCCGCGcGCGCGCc- -3'
miRNA:   3'- aagGCGCCGCug------CGGCGC-CGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 19122 0.67 0.384947
Target:  5'- -aCCGCGGgGGCGCgCGCGcGUaguaccaguccaGCGUGGc -3'
miRNA:   3'- aaGGCGCCgCUGCG-GCGC-CG------------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 19257 0.7 0.273546
Target:  5'- --gCGCGuggaaGCGGgGCuCGUGGCGCGCGGg -3'
miRNA:   3'- aagGCGC-----CGCUgCG-GCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 19429 0.67 0.384947
Target:  5'- cUCCGgGGUGACGauggGCGGCuCGCGc -3'
miRNA:   3'- aAGGCgCCGCUGCgg--CGCCGcGCGCu -5'
29557 5' -65.9 NC_006151.1 + 19628 0.69 0.298755
Target:  5'- -aCCaCGGCGcCGUCGCcGCGCGCGu -3'
miRNA:   3'- aaGGcGCCGCuGCGGCGcCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 20135 0.67 0.377166
Target:  5'- ---gGgGGCgGGCGCCgcggggGCGGCGCGUGGa -3'
miRNA:   3'- aaggCgCCG-CUGCGG------CGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 20203 0.71 0.233575
Target:  5'- aUUCCGCGcGCaGCGCCG-GGCcGCGCa- -3'
miRNA:   3'- -AAGGCGC-CGcUGCGGCgCCG-CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 20320 0.69 0.285932
Target:  5'- gUUgGCGGCGGCGa-GCaGGaCGCGCGAc -3'
miRNA:   3'- aAGgCGCCGCUGCggCG-CC-GCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 20458 0.66 0.4338
Target:  5'- cUCgGgGGUGGCGCCggucccccgGgGGgGCGCGGg -3'
miRNA:   3'- aAGgCgCCGCUGCGG---------CgCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 20605 0.71 0.233575
Target:  5'- gUCCGCGGaCGACGgCGUGGgGUgGUGGg -3'
miRNA:   3'- aAGGCGCC-GCUGCgGCGCCgCG-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 20714 0.67 0.392834
Target:  5'- -cCCGCguccGGCGGgGCCG-GGCGCGaGAc -3'
miRNA:   3'- aaGGCG----CCGCUgCGGCgCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 20765 0.73 0.172392
Target:  5'- -aCCGCGGCGgacgcGCGCCG-GGCGaGCGGc -3'
miRNA:   3'- aaGGCGCCGC-----UGCGGCgCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 20854 0.67 0.417114
Target:  5'- cUCgGCGGCGuacuCGCgCGUguagcaGGCGCGCu- -3'
miRNA:   3'- aAGgCGCCGCu---GCG-GCG------CCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 21314 0.67 0.369491
Target:  5'- -gCgGUGGCgcgaGACGCC-CGGCGCgGCGGg -3'
miRNA:   3'- aaGgCGCCG----CUGCGGcGCCGCG-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 21345 0.68 0.361924
Target:  5'- gUCCGCGGCuggaacGGCuCCGCGG-GCuGCGGc -3'
miRNA:   3'- aAGGCGCCG------CUGcGGCGCCgCG-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.