Results 41 - 60 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 17121 | 0.67 | 0.417114 |
Target: 5'- cUCCgGCGGCGGUGCUGCGGgaG-GCGGc -3' miRNA: 3'- aAGG-CGCCGCUGCGGCGCCg-CgCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 17317 | 0.69 | 0.318818 |
Target: 5'- gUCCGCcgGGgGGCGCCGCGucagcuCGUGCGu -3' miRNA: 3'- aAGGCG--CCgCUGCGGCGCc-----GCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 17390 | 0.7 | 0.244468 |
Target: 5'- gUCCGCacgaCGGgGCgCGUGGCGCGCGGc -3' miRNA: 3'- aAGGCGcc--GCUgCG-GCGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 17472 | 0.75 | 0.116983 |
Target: 5'- -gCCGCGGCGuguccuCGUCgGCGGCGCGCc- -3' miRNA: 3'- aaGGCGCCGCu-----GCGG-CGCCGCGCGcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 18902 | 0.66 | 0.471824 |
Target: 5'- gUCCGCGGUGGCGuUCGUGuGCaccuccucgccgaagGCGuCGAa -3' miRNA: 3'- aAGGCGCCGCUGC-GGCGC-CG---------------CGC-GCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 18998 | 0.69 | 0.279684 |
Target: 5'- --gCGCGGCGcgccaccaGCCGCGcGCGCGCc- -3' miRNA: 3'- aagGCGCCGCug------CGGCGC-CGCGCGcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 19122 | 0.67 | 0.384947 |
Target: 5'- -aCCGCGGgGGCGCgCGCGcGUaguaccaguccaGCGUGGc -3' miRNA: 3'- aaGGCGCCgCUGCG-GCGC-CG------------CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 19257 | 0.7 | 0.273546 |
Target: 5'- --gCGCGuggaaGCGGgGCuCGUGGCGCGCGGg -3' miRNA: 3'- aagGCGC-----CGCUgCG-GCGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 19429 | 0.67 | 0.384947 |
Target: 5'- cUCCGgGGUGACGauggGCGGCuCGCGc -3' miRNA: 3'- aAGGCgCCGCUGCgg--CGCCGcGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 19628 | 0.69 | 0.298755 |
Target: 5'- -aCCaCGGCGcCGUCGCcGCGCGCGu -3' miRNA: 3'- aaGGcGCCGCuGCGGCGcCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20135 | 0.67 | 0.377166 |
Target: 5'- ---gGgGGCgGGCGCCgcggggGCGGCGCGUGGa -3' miRNA: 3'- aaggCgCCG-CUGCGG------CGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20203 | 0.71 | 0.233575 |
Target: 5'- aUUCCGCGcGCaGCGCCG-GGCcGCGCa- -3' miRNA: 3'- -AAGGCGC-CGcUGCGGCgCCG-CGCGcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20320 | 0.69 | 0.285932 |
Target: 5'- gUUgGCGGCGGCGa-GCaGGaCGCGCGAc -3' miRNA: 3'- aAGgCGCCGCUGCggCG-CC-GCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20458 | 0.66 | 0.4338 |
Target: 5'- cUCgGgGGUGGCGCCggucccccgGgGGgGCGCGGg -3' miRNA: 3'- aAGgCgCCGCUGCGG---------CgCCgCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20605 | 0.71 | 0.233575 |
Target: 5'- gUCCGCGGaCGACGgCGUGGgGUgGUGGg -3' miRNA: 3'- aAGGCGCC-GCUGCgGCGCCgCG-CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20714 | 0.67 | 0.392834 |
Target: 5'- -cCCGCguccGGCGGgGCCG-GGCGCGaGAc -3' miRNA: 3'- aaGGCG----CCGCUgCGGCgCCGCGCgCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20765 | 0.73 | 0.172392 |
Target: 5'- -aCCGCGGCGgacgcGCGCCG-GGCGaGCGGc -3' miRNA: 3'- aaGGCGCCGC-----UGCGGCgCCGCgCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 20854 | 0.67 | 0.417114 |
Target: 5'- cUCgGCGGCGuacuCGCgCGUguagcaGGCGCGCu- -3' miRNA: 3'- aAGgCGCCGCu---GCG-GCG------CCGCGCGcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 21314 | 0.67 | 0.369491 |
Target: 5'- -gCgGUGGCgcgaGACGCC-CGGCGCgGCGGg -3' miRNA: 3'- aaGgCGCCG----CUGCGGcGCCGCG-CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 21345 | 0.68 | 0.361924 |
Target: 5'- gUCCGCGGCuggaacGGCuCCGCGG-GCuGCGGc -3' miRNA: 3'- aAGGCGCCG------CUGcGGCGCCgCG-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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