miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 53249 0.66 0.450868
Target:  5'- gUUCuCGCuGGCG-CGCaCGCGGCacagcugccGCGCGu -3'
miRNA:   3'- -AAG-GCG-CCGCuGCG-GCGCCG---------CGCGCu -5'
29557 5' -65.9 NC_006151.1 + 106570 0.66 0.450005
Target:  5'- -cCCGCGGCugcucucGGCGCUGUGGUcCGCc- -3'
miRNA:   3'- aaGGCGCCG-------CUGCGGCGCCGcGCGcu -5'
29557 5' -65.9 NC_006151.1 + 133914 0.66 0.445708
Target:  5'- -cCCcUGGCGGCGCagGCGGCGUuccagaaguugauccGCGAc -3'
miRNA:   3'- aaGGcGCCGCUGCGg-CGCCGCG---------------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 48914 0.66 0.445708
Target:  5'- -aCCGCGGCcgcugccugaccgagGAggUGCUGCccGCGCGCGAg -3'
miRNA:   3'- aaGGCGCCG---------------CU--GCGGCGc-CGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 54642 0.66 0.442287
Target:  5'- ---aGCGGCGGCGCgaGCGcUGCGUGGa -3'
miRNA:   3'- aaggCGCCGCUGCGg-CGCcGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 4859 0.66 0.442287
Target:  5'- gUCCcCGGCGcCGCCGUaGCGgaCGCGGc -3'
miRNA:   3'- aAGGcGCCGCuGCGGCGcCGC--GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 65522 0.66 0.442287
Target:  5'- cUCCGCGGCcagcagcgucauGACGgccUCGUGGCcgaagccgGCGCGGa -3'
miRNA:   3'- aAGGCGCCG------------CUGC---GGCGCCG--------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 77972 0.66 0.442287
Target:  5'- -cCCGCGcCGguacgccgaGCGCgCGCuGCGCGCGAc -3'
miRNA:   3'- aaGGCGCcGC---------UGCG-GCGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 86079 0.66 0.442287
Target:  5'- cUCCGCGcGCG-CGCCGCcGC-CGCc- -3'
miRNA:   3'- aAGGCGC-CGCuGCGGCGcCGcGCGcu -5'
29557 5' -65.9 NC_006151.1 + 97621 0.66 0.442287
Target:  5'- -cCUGCGaGCGGCG-CGCGGCcaugucguugguGCGCGc -3'
miRNA:   3'- aaGGCGC-CGCUGCgGCGCCG------------CGCGCu -5'
29557 5' -65.9 NC_006151.1 + 136103 0.66 0.442287
Target:  5'- -aUCGCGGUcgGGCGCCGCGG-GC-UGAc -3'
miRNA:   3'- aaGGCGCCG--CUGCGGCGCCgCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 68142 0.66 0.439731
Target:  5'- -cCCGCGgaGCGugGUCGUGGUcacggccgccaccaGCGCGu -3'
miRNA:   3'- aaGGCGC--CGCugCGGCGCCG--------------CGCGCu -5'
29557 5' -65.9 NC_006151.1 + 8294 0.66 0.437183
Target:  5'- -cCCGCgcgGGCGccGCGucccgccccgagcccCCGgGGCGCGCGGg -3'
miRNA:   3'- aaGGCG---CCGC--UGC---------------GGCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 92672 0.66 0.437183
Target:  5'- -gCUGcCGGCGGCcggggacgcgcgcucGCCGCGcGCcgaGCGCGAg -3'
miRNA:   3'- aaGGC-GCCGCUG---------------CGGCGC-CG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 55965 0.66 0.4338
Target:  5'- -cCCGCGGCuGGUGUgCGaGGUGCGCGAg -3'
miRNA:   3'- aaGGCGCCG-CUGCG-GCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 69503 0.66 0.4338
Target:  5'- -cCCGCGccgccuccucCGcCGCCGCGcCGCGCGAg -3'
miRNA:   3'- aaGGCGCc---------GCuGCGGCGCcGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 76988 0.66 0.4338
Target:  5'- --gCGCGGUGaggaGCGCCGCgaggguGGCcCGCGAg -3'
miRNA:   3'- aagGCGCCGC----UGCGGCG------CCGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 99086 0.66 0.4338
Target:  5'- -aCCGUGGCGcgGCGCCuGCgcacggaccagGGCGUGCu- -3'
miRNA:   3'- aaGGCGCCGC--UGCGG-CG-----------CCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 112800 0.66 0.4338
Target:  5'- cUUUCGCgGGCGcgcguCGCUGCaGCGCGCc- -3'
miRNA:   3'- -AAGGCG-CCGCu----GCGGCGcCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 37860 0.66 0.4338
Target:  5'- -cCCG-GGCcGCGCCGCGGaccccCGCGCc- -3'
miRNA:   3'- aaGGCgCCGcUGCGGCGCC-----GCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.