miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 129815 0.66 0.468297
Target:  5'- -cCCGUGaGCGcggagcGCGCgGCGGCGUagcccaGCGAc -3'
miRNA:   3'- aaGGCGC-CGC------UGCGgCGCCGCG------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 91723 0.66 0.467417
Target:  5'- -gCCGuCGucgaacaGCGACaUCGCGGCGgGCGAg -3'
miRNA:   3'- aaGGC-GC-------CGCUGcGGCGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 82402 0.66 0.467417
Target:  5'- cUCCGCgcccgagGGCGGCcCCGagaGGCGCGgGc -3'
miRNA:   3'- aAGGCG-------CCGCUGcGGCg--CCGCGCgCu -5'
29557 5' -65.9 NC_006151.1 + 70999 0.66 0.46041
Target:  5'- -gCCGUGGCcaucgugggcgccauGCGCCGCGaGCuCGCGGa -3'
miRNA:   3'- aaGGCGCCGc--------------UGCGGCGC-CGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 121638 0.66 0.459538
Target:  5'- -cCCGUGGCcucucuCGCgGCGGaCGgGCGGg -3'
miRNA:   3'- aaGGCGCCGcu----GCGgCGCC-GCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 96006 0.66 0.459538
Target:  5'- gUCCGUgauGGCGcgcacCGCCuccucgGUGGUGCGCGGc -3'
miRNA:   3'- aAGGCG---CCGCu----GCGG------CGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 96861 0.66 0.459538
Target:  5'- -aCCGCGcccGCcgGGCGCgGC-GCGCGCGGg -3'
miRNA:   3'- aaGGCGC---CG--CUGCGgCGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 103297 0.66 0.459538
Target:  5'- --gCGCGcGCGGCuCgCGCGGCGCGaCGc -3'
miRNA:   3'- aagGCGC-CGCUGcG-GCGCCGCGC-GCu -5'
29557 5' -65.9 NC_006151.1 + 90768 0.66 0.459538
Target:  5'- -aCgGUGGCGGgGUCgGCgGGCGCGCa- -3'
miRNA:   3'- aaGgCGCCGCUgCGG-CG-CCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 96790 0.66 0.458667
Target:  5'- ---aGCGGagaguccCGA-GCCGgGGCGCGCGGg -3'
miRNA:   3'- aaggCGCC-------GCUgCGGCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 101291 0.66 0.458667
Target:  5'- --gCGCgGGCGGCGCCGCGcugcacuGCGUcuucucGCGGg -3'
miRNA:   3'- aagGCG-CCGCUGCGGCGC-------CGCG------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 131966 0.66 0.458667
Target:  5'- ---gGCGGCaguacguGugGUCGCGGUacucGCGCGAg -3'
miRNA:   3'- aaggCGCCG-------CugCGGCGCCG----CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 62020 0.66 0.456928
Target:  5'- -gCCGCccuGGCGgccagccccccgcuGCGCCGCGuggcggugcacGCGCGCGc -3'
miRNA:   3'- aaGGCG---CCGC--------------UGCGGCGC-----------CGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 103197 0.66 0.454325
Target:  5'- -cCCugGCGGCcgccccggacgaggaGACG-CGCGuGCGCGCGAu -3'
miRNA:   3'- aaGG--CGCCG---------------CUGCgGCGC-CGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 50676 0.66 0.450868
Target:  5'- -gCCGCacccccGCGcCGCCGCGGCaGCGUc- -3'
miRNA:   3'- aaGGCGc-----CGCuGCGGCGCCG-CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 53789 0.66 0.450868
Target:  5'- gUUCUggGCGGCGACGCgCGuCGaGCcCGUGAu -3'
miRNA:   3'- -AAGG--CGCCGCUGCG-GC-GC-CGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 69448 0.66 0.450868
Target:  5'- gUUCGCGuccucGCG-CGCCGCGG-GCGCc- -3'
miRNA:   3'- aAGGCGC-----CGCuGCGGCGCCgCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 138708 0.66 0.450868
Target:  5'- -gCC-CGGCGcUGCgCGCcGCGCGCGGg -3'
miRNA:   3'- aaGGcGCCGCuGCG-GCGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 21472 0.66 0.450868
Target:  5'- -cCCGCgucgccggcucgGGCaGGCgGCCGgGGgGCGCGGg -3'
miRNA:   3'- aaGGCG------------CCG-CUG-CGGCgCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 81676 0.66 0.450868
Target:  5'- ---aGCGGCGguACGCCuCGGCgacggucgcccGCGCGAg -3'
miRNA:   3'- aaggCGCCGC--UGCGGcGCCG-----------CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.