Results 21 - 40 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 3247 | 0.85 | 0.021823 |
Target: 5'- --gCGCGGCGgcggagcgggGCGCCGCGGCGCGCGGc -3' miRNA: 3'- aagGCGCCGC----------UGCGGCGCCGCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 118020 | 0.66 | 0.471824 |
Target: 5'- -cCCGCGaCGAUggagGCCGCGGCcaagaccgugaccguGCGCGc -3' miRNA: 3'- aaGGCGCcGCUG----CGGCGCCG---------------CGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 81501 | 0.66 | 0.477141 |
Target: 5'- -gCCGuCGGCGAgaG-CGCGGCccGCGUGAg -3' miRNA: 3'- aaGGC-GCCGCUg-CgGCGCCG--CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 74077 | 0.66 | 0.477141 |
Target: 5'- gUCCaCGGCGACGCa--GGCGuUGUGGa -3' miRNA: 3'- aAGGcGCCGCUGCGgcgCCGC-GCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 5026 | 0.66 | 0.477141 |
Target: 5'- cUCCGgGGCcggggccgggGAgGCCGCGGCGgaggaggagGCGGa -3' miRNA: 3'- aAGGCgCCG----------CUgCGGCGCCGCg--------CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 101753 | 0.66 | 0.477141 |
Target: 5'- -aCC-CGGCGGcCGCCGCGcCGC-CGAc -3' miRNA: 3'- aaGGcGCCGCU-GCGGCGCcGCGcGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 68392 | 0.66 | 0.477141 |
Target: 5'- -gCCGCGGCcACcuCCaUGGCGCGCGc -3' miRNA: 3'- aaGGCGCCGcUGc-GGcGCCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 64768 | 0.66 | 0.477141 |
Target: 5'- gUgCGCGGgGGCugGuuGcCGGgGCGCGAg -3' miRNA: 3'- aAgGCGCCgCUG--CggC-GCCgCGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 57351 | 0.66 | 0.477141 |
Target: 5'- gUCCGCGGgGcccucGCGCCGCcGCagccaguagGCGUGGc -3' miRNA: 3'- aAGGCGCCgC-----UGCGGCGcCG---------CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 139574 | 0.66 | 0.476252 |
Target: 5'- gUCCGCGaGCGccugggcucGCGCCcccccgaGCGGCggcccguccggGCGCGGc -3' miRNA: 3'- aAGGCGC-CGC---------UGCGG-------CGCCG-----------CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 68959 | 0.66 | 0.476252 |
Target: 5'- -cUCGCGGCgcacggacucgcgGACGCCggccaGCaGCGCGCGc -3' miRNA: 3'- aaGGCGCCG-------------CUGCGG-----CGcCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 113646 | 0.66 | 0.477141 |
Target: 5'- --gCGCGGCGACG-CGCuGCGCaagGCGc -3' miRNA: 3'- aagGCGCCGCUGCgGCGcCGCG---CGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 18902 | 0.66 | 0.471824 |
Target: 5'- gUCCGCGGUGGCGuUCGUGuGCaccuccucgccgaagGCGuCGAa -3' miRNA: 3'- aAGGCGCCGCUGC-GGCGC-CG---------------CGC-GCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 129815 | 0.66 | 0.468297 |
Target: 5'- -cCCGUGaGCGcggagcGCGCgGCGGCGUagcccaGCGAc -3' miRNA: 3'- aaGGCGC-CGC------UGCGgCGCCGCG------CGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 106350 | 0.66 | 0.468297 |
Target: 5'- --aCGCGGUGgacACGCuggaCGCgGGCGCGCGn -3' miRNA: 3'- aagGCGCCGC---UGCG----GCG-CCGCGCGCu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 43677 | 0.66 | 0.468297 |
Target: 5'- -cCCcUGGCGACGaggggcCCGcCGGCGCGaCGGg -3' miRNA: 3'- aaGGcGCCGCUGC------GGC-GCCGCGC-GCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 4388 | 0.66 | 0.468297 |
Target: 5'- cUCCcCGGCG-CGgggguCCGCGGCGCGg-- -3' miRNA: 3'- aAGGcGCCGCuGC-----GGCGCCGCGCgcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 41596 | 0.66 | 0.468297 |
Target: 5'- aUCCGCGGagccCGCCcCGGCcGCGCc- -3' miRNA: 3'- aAGGCGCCgcu-GCGGcGCCG-CGCGcu -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 129734 | 0.66 | 0.468297 |
Target: 5'- gUUCGCGGgcccgcgaGGCGCUGCaGCaccaGCGCGAa -3' miRNA: 3'- aAGGCGCCg-------CUGCGGCGcCG----CGCGCU- -5' |
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29557 | 5' | -65.9 | NC_006151.1 | + | 106015 | 0.66 | 0.468297 |
Target: 5'- -cCUGCGGCucaACuaCGagaaGGCGCGCGAc -3' miRNA: 3'- aaGGCGCCGc--UGcgGCg---CCGCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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